Perognathus longimembris pacificus (Pacific pocket mouse): 125341523
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Entry
125341523 CDS
T08928
Symbol
Synpo2
Name
(RefSeq) LOW QUALITY PROTEIN: synaptopodin-2
KO
K24066
synaptopodin-2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125341523 (Synpo2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
plop04990
]
125341523 (Synpo2)
Domain-containing proteins not elsewhere classified [BR:
plop04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
125341523 (Synpo2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
125341523
NCBI-ProteinID:
XP_048189528
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All DBs
Position
24:complement(7392863..7510740)
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AA seq
1244 aa
AA seq
DB search
MGTGDFICISMTGGAPWGFRLQGGKEQQQPLQVAKIRSQSKASGSGLCEGDEVVSINGTP
CAELTYPEVIKLMESIVDSLQMLVKRPSSGISEALISETQNKPQEHLPHLEYVESTTLQI
RPATKTQGGEPFTTSAQGGDPLAEDQKSASNCIRDIEETDLSYQRDPQILHSQEAIFREK
VGTGPVVELQLSLSEASHRGSHSPAGAVQGAEHVKSPDPHSSFYHEEAFHINSVTAHEKA
DPSLRSSKFIQISSGRELTVIQGEEAEDDPGLARVEGIFHCSDRHKAEGHRLQAGKGCVV
SPVEGGQSEAPPSLVSFAVSSEGTEQGEDPCSDKDHRRPHKHRARHARLRRSESLSEKQV
KEAKSKCKSIALLLTDAPNPNSKGVLMFKKRRRRARKYTLVSYGTGELEREDEDEEEEGP
EDAFEAAFVGASESEVDEELLSEADDGPQVVTFDWDSGLVDIERKPRQGDKMELLPDSTG
KGAVMFAKRRERMDQITAQKEEERVAPGREADAVQVDSLRSAMSYRRQEEESVSVQSSVS
TSYVPLGRGAAHLPQQNGLGAAPGAPEAPRPVPMMNRTAKPFPGTGAPPAALGDPARHPT
SPRADLPAPPPYSAVTPPPETFARAPPQPPPWPQPGPWAQPAFYDSSERIASRDERIAVP
AKRTGILQEAKRRSTTKPMFTFKEPKVSPNPELLSLLQNSEGKRGAGAGGDSGPEEDYLS
LGAEACNFMQSSSAKQKTPPPVAPKPAVKSPASQPAPPVSPVWSPGPVARTQPPAFPTSN
PAPGPAVSAIKIAQPFAPVRPASALNLAGPFKGPQDAVANQSYGPKPAAATPTAGPTNEL
PGMSGKGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSPTPSLPASWKYSSNVRAPPPVAY
NPIHSPSYPLAAVKSQSPAPQASKVSKKKGKKPLNTLDVMKHQPYQLSASLFTFQPPDAK
ESLPQRPPAKVSAAPATRQALPPRPVSVGSPVRAQASSGSVYSVPAYAAPYTEPPASFPE
AASPASASPVPPGLPASPKHEVASSSYFVAPRPKFSAKRSGVTVQESGGRSLSLPGRSIP
PTISPSPWEYQPAYSYPAKPINRLEKANKRPTPWEAAARSPLGLVDEAFRPRSIQESIMA
NVVSAARRKVLPGPVEDWSERMSYVSQTQTTTSSLERLDDNVAFPINNSMSTNYQYSSQP
PYAFYRQGSRNDSEIMSLETRSDYCLPLATCNYNPHPRGWRRQT
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggggattttatttgcatttccatgactggaggggcgccctggggattccgg
ctacagggtggcaaggaacagcagcagcctttacaagttgcaaagattcgaagccagagc
aaagcgtcggggtcagggctgtgcgagggggatgaagtggtgtccatcaacggcactcct
tgcgcagagctcacctaccctgaagtcatcaagcttatggagagcatagtggactctctg
cagatgctggtgaaaagaccatctagtggaataagtgaagctttgatctctgaaacgcag
aacaaaccccaggaacacctcccacatttggagtatgtggaaagtacaaccctgcagatc
cgcccagccaccaagactcagggtggggagccctttaccacctcagcccagggtggggat
cccctagctgaagaccaaaagagtgcttccaattgtataagagacatagaggaaacagat
ctgagctaccaaagggatccccaaattcttcactcccaagaagccatcttcagggagaag
gtgggaacaggccctgtggtggagctacagctgtcactctcagaggcgagccacaggggc
agccacagccctgcaggggctgtccagggagctgaacatgtcaaatctcctgacccacac
tcaagcttctaccatgaggaggccttccacataaattcagtgactgctcacgagaaagca
gacccttctctgaggtccagcaagttcatccagatttccagtggcagagaattgacagtg
atccagggagaggaagcagaggacgacccggggctggcccgtgtggaagggatcttccac
tgctctgacagacacaaggcagaagggcacaggctgcaggcaggaaaggggtgtgtggtt
tccccggtggaaggagggcagtcagaagcacctccttctctggtctcctttgccgtctca
tcagaaggcacagagcagggagaagacccatgctccgacaaagaccatagaagaccacac
aagcacagagctcggcacgcaaggctccgaaggagtgagagcctgtcggagaagcaggtg
aaggaagccaagtctaaatgcaaaagcatcgccctccttctgacagacgccccgaacccc
aactccaagggggtgttgatgtttaagaagcgccggcggagggcgaggaagtacacgctg
gtcagctacggcaccggggagcttgagagggaggacgaggacgaggaggaggagggccca
gaggacgccttcgaggcggcattcgtgggcgccagcgagtccgaggtggatgaggagctg
ctgtctgaggcggacgacgggccccaggtggtgaccttcgactgggactcggggctggtg
gacatcgagcggaagccgcgccagggggacaagatggagctgttacccgacagcacgggc
aagggggccgtcatgttcgccaagcggagggagcggatggatcagatcaccgcgcagaag
gaggaggagcgtgtggcgccgggccgggaggcagatgcagtccaggtggacagcctgcgg
agtgccatgtcctaccgacggcaggaggaggaatcggtgagcgtgcagagctcggtgagc
acgagctacgtcccgctgggccgcggggccgcccatctgccacagcagaacggcctgggc
gcggcacccggggcccccgaggcgcccaggcccgtcccgatgatgaacaggacggccaag
cccttcccgggaaccggggccccgccggccgcgctcggcgacccggcccgccacccgacg
agcccccgcgcggacctccccgcgccgccgccctactctgccgtcaccccgccgcccgag
accttcgctagggccccgccgcagcccccgccgtggccccagcccgggccctgggcgcag
cccgccttctacgactcctcggaacgcattgcttcccgggacgagaggatcgcggtgccc
gccaagaggacggggatcctgcaggaggccaagaggaggagcaccaccaagcccatgttt
accttcaaggagcccaaggtcagccccaacccggaactgctgtcgctcctacagaattcg
gaaggcaagaggggcgccggggccgggggcgactcgggccccgaggaagactacctgagc
ctgggcgccgaggcctgcaacttcatgcagagctcctcggccaagcagaagacgcccccg
cccgtggcccccaagcccgccgtcaaatcgccagcctcccagccagcgccccccgtttct
ccagtctggtctccaggacctgtggctcggacccagcctccagcctttcccacatccaac
ccagcgccaggccccgccgtctccgccatcaaaatagcccaaccattcgctcccgtccgg
cctgcgagtgccctgaacctggctggtcccttcaaaggccctcaagacgcagtagccaat
cagagttacgggcccaagcctgcggcggccacgcccactgcggggccaaccaatgagctg
cccgggatgagtgggaagggcgcacagctcttcgccaagaggcagtcgcgcatggagaag
tacgtggtggattccgacacggtgcaggcgcacgcggcccgcgcgcagtcccccacgccg
tccctcccagccagctggaagtactcctccaacgtccgcgcgccccctccggtggcctac
aacccgatccactccccttcctacccgctggcggccgtcaagtcccagtccccagcccca
caggcctccaaagtgagcaagaagaagggcaagaagcccctcaacactctggacgttatg
aaacaccagccttaccagctcagtgcgtccttgtttactttccagcctccggatgcaaaa
gagagccttccccagaggcccccggcgaaggtcagtgccgccccagccaccaggcaagcg
ctgcctccccggcccgtgagcgtgggctcccccgtgcgcgcgcaggcctcgtccgggtct
gtgtactcggtcccggcctacgctgcgccttacaccgagcccccagccagcttccccgag
gccgcctcgcctgccagcgcgtccccggtgcccccgggccttcccgcctctcccaagcac
gaagtggcctcctcgtcttatttcgtggcaccaaggccgaagttttcagccaagagaagc
ggtgtcacagtccaggaaagtggggggcgctcactttctcttccgggaagatccatccca
cccactatttctccatctccgtgggaataccagcctgcttacagctaccctgccaaacca
atcaacaggctggagaaagccaacaagagaccaactccttgggaagctgcagcaaggtct
cctctcggcctggtggatgaggcgttcagacccagaagcattcaggaatccattatggcc
aatgtggtttccgcagctcgaaggaaggtgcttccagggcctgtggaagactggagtgag
aggatgtcctatgtttcccaaactcagaccaccacaagctcacttgaaaggctagatgat
aatgttgcattcccaatcaacaacagcatgtccaccaactaccaatacagctcacagcca
ccatatgcattctataggcaaggctccagaaatgattctgaaatcatgtccttggaaacc
aggtctgattactgccttccactagccacttgcaactataacccacacccaaggggatgg
agacgtcaaacatga
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