Perognathus longimembris pacificus (Pacific pocket mouse): 125341622
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Entry
125341622 CDS
T08928
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03015
mRNA surveillance pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125341622
09123 Folding, sorting and degradation
03018 RNA degradation
125341622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125341622
03041 Spliceosome [BR:
plop03041
]
125341622
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125341622
mRNA cycle factors
Stress granule specific factors
125341622
Spliceosome [BR:
plop03041
]
Complex C
Other components
Complex C specific factors
125341622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_10
POP1_C
RRM_3
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
125341622
NCBI-ProteinID:
XP_048189632
LinkDB
All DBs
Position
24:8301649..8303650
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AA seq
550 aa
AA seq
DB search
MWSQRDPSLCKSGVGNIFIKNFDKSIDNKALYDTFSAFGNILSCKVVCDGNGSKGYGFVH
FETQETVERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDD
ERLKELFGKFGPALSVKIMTDESGKSKGFGFVSFERHEDAQKAVDEKNGKELNGKQIYVG
RAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK
VMMEGGRSKGFGFVCFSSLEEATKAVTEMNGRIVATKPLYVALAQRKEECEAHLTNQYMQ
RMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTVQGARP
HPFQNMPGAICPAAPRPPFSTMRPASSQVPRVMSTQRVTYINTMCPHPAAAAAAATPAVC
TIPQYKYAAGVHNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASVPPQEQKLMLGERL
FLLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKEAAQKA
VNSATGVPTV
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtggtctcagcgtgatccatcactttgtaaaagtggagtgggcaacatattcattaaa
aatttcgacaaatccattgataataaagcactgtatgatacattttctgcttttggtaac
atcctttcatgtaaggtggtttgtgatggaaatggttccaagggctatggatttgtacat
tttgagacacaagaaacagttgaaagagctattgaaaaaatgaatgggatgcttctaaat
gatcgcaaagtgtttgttggacgatttaagtctcgtaaggaacgagaagcagaacttgga
gctagggcaaaagaattcaccaatgtttacatcaagaattttggagaagacatggatgat
gagcgccttaaggaactctttggcaagtttggacctgccttaagtgtgaaaataatgact
gatgaaagtgggaaatccaaaggatttggatttgtaagctttgaaaggcatgaagatgca
cagaaagctgtggatgagaagaacggaaaggagctcaatggaaaacaaatttacgttggt
cgagctcagaaaaaagtggaacgacagacagaactgaagcgcaaatttgagcagatgaac
caagataggatcaccagataccagggtgttaacctttatgtgaaaaatcttgatgatggt
attgatgatgaacgtctccggaaagagttttctccatttggtacaatcactagtgcaaag
gttatgatggaaggtggtcgaagcaaagggtttgggtttgtatgtttctcctccctagaa
gaagccactaaagcagttacagaaatgaatggtagaatcgtggccacaaagccactctat
gtagctttagctcagcgcaaagaagagtgtgaagctcacctcactaaccagtatatgcag
agaatggcaagtgtacgagctgtgcccaaccctgtaatcaacccctaccagccagcacct
ccttcaggttacttcatggcagctatcccacagactcagaaccgtgctgcatactatcct
cctagccaaattgctcaactaagaccaagtcctcgctggactgttcagggtgccagacct
catccattccaaaatatgcccggtgctatctgcccagccgctcctagaccaccatttagt
actatgagaccagcttcttcacaggttccacgagtcatgtccacacagcgtgttacttac
atcaacacaatgtgtccacatcctgcagctgctgcagcagcagccactcctgctgtctgc
accattccccagtataaatatgctgcaggagtccacaatcctcagcaacatcttaatgca
cagccacaagttaccatgcaacaacctgctgttcatgtacaaggtcaggaacctttgact
gcttccatgttggcatctgtcccccctcaagagcaaaagctaatgttgggtgaaaggctg
tttcttcttatccaagccatgcaccctactcttgctggtaaaatcactggcatgttgttg
gagatagataattcagaattacttcatatgcttgagtctccagagtctctgcattctaag
gttgatgaagctgtggctgtactacaagcccaccaagctaaagaggctgcccagaaagca
gtcaacagtgccactggtgttccaactgtttaa
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