Perognathus longimembris pacificus (Pacific pocket mouse): 125341857
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Entry
125341857 CDS
T08928
Symbol
Trim41
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM41
KO
K12017
tripartite motif-containing protein 41 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125341857 (Trim41)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125341857 (Trim41)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125341857 (Trim41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_2
Apolipoprotein
zf-RING_5
zf-RING_6
DUF3631
Fer2
Phage_lysis
DUF1664
Motif
Other DBs
NCBI-GeneID:
125341857
NCBI-ProteinID:
XP_048189930
LinkDB
All DBs
Position
25:17113727..17124780
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AA seq
628 aa
AA seq
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MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDREELD
REEEEEDGEEEEVEAVGAGGGWDTPMRDDDYEGDMEEEVEEEEEGLFWNGGMGGSNWENM
DYVWEEDEEEEDLNYYLGDMEDLRGEEEEDEEEVLEEDEEEELDPVTPLPPPPAPRRCFT
CPQCRKSFPRRSFRPNLQLANMVQVIRQMHPNPGRGSRVNEQGICPKHQEALKLFCEVDE
EAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMKAKEERRVTEL
KSQMKSELAAVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASRLAEQAAQLSR
LLAEAQERSQQGGLRLLQDIKETFNRCEEVQLQPPEIWSPDPCQPHSHDFLTDAIVRKMS
RMFCQAARVDLTLDPDTAHPALLLSPDRRGVRMAERRPDVADHSKRFSSDCCVLGAQGFR
SGRHYWEVEVGGRRGWAVGAARESTHHKEKMGPGGSSVGSGDASSSRHHHRRRRLHLPQQ
LLLQREVWCVGTHGKRYQAQSSTEQTLLSPCEKPRRFGVYLDYEAGRLGFYNAETLAHVH
TFSAAFLGERVFPFFRVFSKGTRIKLCP
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgttgccatgacacccaaccccgtgcagacccttcaggaggaggcggtgtgc
gccatctgcctcgattacttcacggaccccgtgtccatcggctgcgggcacaacttctgc
cgcgtgtgtgtaacccagctgtggggcggggaggacgaggaggaccgggaggagctggac
cgggaggaggaggaggaggacggggaggaagaggaggtggaggccgtgggggccggcggc
ggctgggacacccccatgcgggacgacgactacgagggggacatggaggaggaggtggag
gaggaagaggagggcctgttctggaacggtggcatgggcgggtccaactgggagaacatg
gactacgtgtgggaggaggacgaggaggaggaggacctcaactactacctgggggacatg
gaggacctgaggggcgaagaggaggaggacgaggaggaagtgctggaggaggacgaggag
gaagagctggaccccgtcaccccgctgcccccgcccccggccccccgccgctgcttcacc
tgcccccagtgccggaagagtttcccccggcggagctttcgccccaacctgcagctggcc
aacatggtgcaggtgatccgtcagatgcaccccaacccgggccgggggagccgcgtcaac
gagcaaggcatctgccccaaacaccaagaagccctgaagctgttctgcgaggtggacgag
gaggccatctgcgtggtgtgccgggaatcgaggagtcacaagcagcacagcgtggtgccg
ctggaggaggtggtgcaggagtacaaggccaaactgcaggggcatgtggaacctcttcgg
aagcacctcgaggctgtgcagaagatgaaagccaaggaggagaggcgagtgactgagctg
aagagccagatgaagtcagagctggcggctgtggcatcagagtttgggcggctgacacgg
tttctggctgaagaacaggccgggctggagcggcgccttcgggagatgcacgaggcccag
ctgggacgcgcgggagccgccgccagccgcctggccgagcaggctgcccagctaagccgc
ctgctggccgaggcgcaggagcggagccagcagggaggcctgcggctgctccaggacatc
aaggagactttcaataggtgtgaagaggtacaactgcagcccccggagatctggtcccct
gacccgtgccagcctcatagccatgacttcctgacagacgccatcgtgaggaaaatgagc
cggatgttttgtcaggctgcaagagtggacctgacactggatcccgacacagctcatcca
gccctgctgctgtccccggatcgccggggggtccgcatggcggaacggcgcccggatgtg
gcagaccattccaagcgcttctccagtgactgctgtgtactgggggcccagggcttccgc
tctggccggcactactgggaggtagaagtgggcgggcgacggggctgggcggtgggtgct
gcccgagaatcaacccaccataaagaaaaaatgggccctggggggtcctctgtgggcagt
ggggatgccagttcctcacgccatcaccatcgccggcgccggctccacctgccccagcag
ctcctgctccagcgggaagtgtggtgtgtgggcacccatggcaaacgctaccaggcacag
agctccacagagcagacgctgctgagcccatgtgagaaaccgaggcgctttggcgtgtac
ctggactatgaggctgggcgcctgggcttctacaacgcggagactctagcccatgtgcac
accttctcagctgccttcctgggcgagcgtgtcttccctttcttcagggtgttctccaag
ggcacccgcatcaagctctgcccttga
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