Perognathus longimembris pacificus (Pacific pocket mouse): 125341870
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Entry
125341870 CDS
T08928
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125341870 (Ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125341870 (Ddx46)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125341870 (Ddx46)
Spliceosome [BR:
plop03041
]
Complex A
U2 snRNP components
U2 related factors
125341870 (Ddx46)
Complex B
125341870 (Ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
125341870
NCBI-ProteinID:
XP_048189945
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All DBs
Position
25:4817669..4864390
Genome browser
AA seq
1031 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKAENRS
RSKEKTEGGESSKEKKKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGTEMEDEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVADSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTVVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQDVMQQATNAILRGGTILAPTVSAKTIAEQL
AEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISE
YSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSY
QPTNKGRYKVL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgggagtcgcgccactatcgaaaacgatcagcatcacgaggtcgctctggaagt
cgatctagaagtcgttcgccctcagacaaaagaagtaaacgtggagatgacagacggtct
agaagcagagatagagatagaaggagagagaggtctcggagcagggataaacgaagatct
cggtcaagggacagggacaggaagcgtctgaggcgttccagaagtagagagagagacaga
agccgagaaagaagaagatctagaagccgagataggagacggtcaagaagcagaagccgg
ggtcggcgatctcggtcctccagtcctggcaataaaagcaagaaagctgaaaacaggtct
agatccaaagagaaaacagaaggtggagagagttcgaaagagaagaaaaaagatgacaag
gaggatgaaaaggaaaaagatgctggtaattttgaccagaataagctggaagaagaaatg
agaaagcgaaaggaaagagttgaaaaatggagagaagaacagcggaaaaaggccatggaa
aacatcggggaacttaaaaaggagatcgaagagatgaaacaagggaaaaagtggagttta
gaagatgatgatgatgatgaagatgatcccgctgaagctgaaaaggaaggcactgagatg
gaggatgaggagttagatccattagatgcttacatggaagaagtgaaagaggaagtaaaa
aaattcaacatgagaagtgtgaaaggtgggggagggaatgaaaagaagtctgggccaaca
gtcacaaaagtggtcactgttgtaacaaccaaaaaagcagttgccgattcagataagaag
aaaggtgaattgatggagaatgaccaggatgccatggagtattcttcagaagaggaagaa
gttgatcttcagacggcccttacaggttatcagacaaaacagagaaaacttctggaacca
gttgatcatggaaaaattgaatatgagccattcaggaaaaacttttatgttgaagttcca
gaactagcaaaaatgtcccaagaagaggtgaatgtatttcgattggaaatggaaggcatt
acagttaaaggaaaaggttgccccaaaccaattaaatcctgggtccagtgtgggatttcc
atgaagatcttaaattccctgaaaaagcatggctatgaaaagccaacaccaattcagacc
caagcaattcctgctataatgtctggacgagatttgattggcattgccaagacaggaagt
ggaaagaccattgcttttctcttgcccatgttcagacacatcatggatcagaggtcatta
gaagaaggagagggaccaatagctgtcatcatgactccaactcgagaactggctttacaa
attactaaggaatgtaagaagttctccaagactttaggacttagagtggtctgtgtttat
ggaggaacaggaatcagtgagcagattgctgagctgaaaagaggtgctgaaattattgtt
tgcacacctggtcgaatgattgacatgctagcagctaacagtggtcgggtcacgaatctt
cgaagagtgacgtacgttgttttagatgaagcagatagaatgtttgacatgggctttgaa
ccgcaggtcatgcgcattgtggacaatgtccgtcctgatcgacagacagttatgttttca
gctacttttcccagggctatggaggccttggcccgcagaatactgagtaaacccattgaa
gtacaggttgggggtcgaagtgtggtttgttcggatgtggaacaacaagtgattgtgatt
gaagaagaaaagaaattcttgaagttacttgagcttctaggtcattatcaagaatcagga
tctgtcattatatttgtggataagcaggaacatgctgatggtcttctgaaggatttaatg
agagcatcttatccttgcatgtctcttcatggagggatcgatcaatatgacagagatagc
atcataaatgactttaagaatggaacctgcaagcttcttgtagccacttctgttgctgcc
cgaggtctggatgtgaaacatctgattcttgtggtcaattacagttgccccaaccattat
gaggattatgtgcacagagcaggacggactgggagagcaggcaacaaaggctatgcatat
acgtttatcacagaagaccaagctcgctatgctggtgacataattaaagctcttgaacta
tctgggactgtagtgcctcctgatctagagaaactttggagtgatttcaaagatcagcag
aaagctgaaggaaaaataattaaaaagagtagtgggttctctggtaagggattcaagttt
gatgaaacagaacaagctttggcgaatgagaggaagaagttgcagaaagcagctcttggt
ctgcaggattcagacgatgaggatgctgcggttgatattgatgaacaaatagaaagcatg
tttaattcaaagaagagagttaaagatatggctgctcctggcacatccagtgttcctgct
ccaactgcaggaaatgctgagaaactggaaatcgctaagagactggctcttagaatcaat
gctcagaagaatttgggcatcgagtctcaggatgtgatgcaacaggccaccaatgcaatc
ctcagaggtggcaccatcctggctcccactgtgtccgcaaaaaccatcgcagagcaactt
gctgagaagatcaatgccaagctcaattatgtgcctttggagaaacaagaagaagagcgg
caggatggaggacagaatgaatcttttaagagatatgaggaagaattagagatcaatgac
ttcccacagactgctcggtggaaagtcacctctaaggaagctctacagagaatcagtgaa
tattctgaagctgcaatcacaatccgaggcacatatttccctcctggcaaggagcccaag
gaaggagagcggaaaatttacctggcaatcgaaagtgccaatgaactggctgtgcagaaa
gcaaaggcagaaatcaccaggctcataaaagaagaactgatccgactgcaaaattcatac
caaccaacaaataaaggaagatataaagtcttatga
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