Perognathus longimembris pacificus (Pacific pocket mouse): 125341992
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Entry
125341992 CDS
T08928
Symbol
Sox30
Name
(RefSeq) transcription factor SOX-30 isoform X1
KO
K09271
transcription factor SOX15/30
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125341992 (Sox30)
Transcription factors [BR:
plop03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125341992 (Sox30)
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
125341992
NCBI-ProteinID:
XP_048190089
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Position
25:complement(18347763..18362978)
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AA seq
794 aa
AA seq
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MERVRSEPPPPRPRQPPRATPRRPGPPPPPVEGTCFHTAAAEPPSSSSPPPPAPCAAAMT
TVAPSGGEGPTSGVQPVTRRLLQMKPEQVLLLPSGPLLSPVPDDGLVASSAQARLLQLGP
ELLLLPPPPPPLLPEGAPCRPDSRPGPPRGALQVKAELPEPGPGGLDLAAALGPRRVIET
GGGARAARAAARMDHAGLALDGRRADEKAAEEALRDAATGGDGGRALVAIGEGIVKTEEP
DRLHEDFRLGPDALANGLMHGGGKEVILAPPPPPPGAFAPPPPPPPPLQPQPPPAQPDLR
LPLTLHAVPPGARLQFQAPPPSELIRLTKVPLTPVPIKMQSLLEPSVKIETKDVPLTVLP
SDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLS
EEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSVSNVFSGTTQNIISTNPTTI
YPYRSPTYSVVIPSLQNTIPHPVGEPPPAIQLPTPAVQRPSPITLFQPSVSSTAQVAVQA
PSLPLRPALPPPRFAGPSQTDGHRLPSGASHSIKRPTPVSLDTTHRVPTSASPAHARFAP
STIQPPKEYSGVATCPRSAPIPQAPSIPHTHVYQPTPLGHPATLLGTPPRFSFHHPYFLP
GPHYFPSSTCPYSRPPFGYGNFPSSMPECLGYYEDRYQKHEAMFSALNRDYPFRDYPDER
AHSEDSRGCESVDGTAYYNSHGHCGDGYLSPVPQLDMGALDNVFPAPTSTPSSIQQVNVT
DSDEEEEEKVLRNL
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggagagggtccggtcagagccgccgccgcctcggccgcgccaaccgccacgggccacc
ccgcggcgccccggtccgcccccgccgccggtcgagggcacctgctttcacacggcggcc
gccgagcctccgtcgtcgtcgtcgccgccgccacctgccccgtgcgcggccgccatgacg
acggtggccccgtcgggcggggaaggcccgacgtcgggcgtccagcccgtgacccggcgg
ctgctgcagatgaaaccggaacaggtgctgctgctgccgtcggggccgctcttgtctccg
gtcccggacgacggcctggtggcctcgtctgcgcaggcgcggttgctgcagctgggtccc
gagctgctgctgttgccgccgccgccgccgcccctcctgcccgagggcgccccctgcagg
ccggactcccgccccgggccgccccggggggcgctgcaggtcaaagccgagctgcccgag
ccggggcccggcggcctggacctggcggcggcgctgggaccccggagggtcatcgagacg
ggcggcggcgctagagcggccagggcggccgcccgcatggaccacgccgggctggcgctc
gacggccgccgcgccgacgagaaggcggcggaggaggccctgcgggacgcggcgacgggc
ggcgacggcggccgggcgctggtggccatcggggagggcatcgtcaagacggaggagccc
gaccggctccacgaggacttccggctgggccccgacgccctggccaatggcctgatgcac
ggcgggggcaaggaggtcatcctggcgccgccgccgccgcccccgggcgccttcgcgccg
ccgccgccgccgccgccgccgctgcagccccagccgcccccggcccagccggacctccgg
ctcccgctgacgctgcacgcggtgccccccggggcccgcctccagttccaggcgcccccg
ccctccgagctgatccggctgaccaaggtccccctcacgccggtgcccatcaagatgcag
tccctgctggagccgtcggtcaaaatcgaaaccaaggacgtcccgctcaccgtgctcccc
tcggacgcaggaataccagatactcccttcagtaaggacagaaatggccatgtgaagcga
cccatgaatgcattcatggtttgggcaagaatccaccggccagcactagccaaagccaac
ccagccgccaacaacgcagaaatcagtgtccagctcgggttagagtggaacaaacttagc
gaagaacaaaagaaaccttactatgacgaagcgcaaaagattaaagaaaagcacagagag
gaatttcctggttgggtttatcagcctcgtccagggaagcgaaaacgcttccctctaagc
gtttctaacgtattttctggtaccacacagaatattatctcaacaaatcctacaacaatt
tatccttatcggtcacctacctattctgtggtaattcccagcctacagaacaccatccct
catccagttggcgaacccccccctgccatccagctgcccacgcctgccgtccagcgcccc
agccccatcacgcttttccagcccagcgtctccagcactgcgcaggtggctgtccaggct
ccgagtctgccgctccgcccagcgctgccccctccgcgctttgctgggccttcccaaacc
gacggccaccggctgccctctggagccagccactctatcaagagacccaccccggtgtcc
ctggacaccacccacagggttccgaccagcgccagccctgcccacgccagattcgcaccc
tccaccatccagcctcccaaggagtattccggcgtggccacttgccccaggagtgccccg
attccccaggcaccttccatcccacacacccacgtctaccagcccacccccctcggccat
cccgccacgctgttgggaacaccgccgcggttctccttccatcacccctacttcctcccc
ggacctcactacttcccatcaagcacgtgcccttacagtcggcctcccttcggctacggg
aatttcccaagctcgatgccggaatgccttggttattacgaagacaggtaccaaaaacac
gaggctatgttttcagctttgaatagagactatcctttcagagactaccccgacgagcgc
gcccacagcgaggactcccggggctgtgagagcgtggacgggaccgcgtactataacagc
cacggccactgcggggacggctacctgagccccgtgccccagctggacatgggcgccctg
gacaatgtcttcccagcccccacctcgaccccctccagcatccagcaagtcaacgtcact
gacagtgacgaggaggaagaagaaaaagtgctccgcaatttataa
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