KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125342181
Entry
125342181         CDS       T08928                                 
Symbol
Thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013  Nucleocytoplasmic transport
plop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125342181 (Thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    125342181 (Thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:plop03019]
    125342181 (Thoc3)
   03041 Spliceosome [BR:plop03041]
    125342181 (Thoc3)
Messenger RNA biogenesis [BR:plop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     125342181 (Thoc3)
Spliceosome [BR:plop03041]
 Complex C
  Other components
   EJC/TREX
    125342181 (Thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    125342181 (Thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR3_2nd Beta-prop_Aladin WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_Vps41 DSE1_N eIF2A Beta-prop_WDR36-Utp21_1st WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_NOL10_N Beta-prop_WDR35_TULP_N Beta-prop_HPS5 WD40_MABP1-WDR62_1st NBCH_WD40 RMC1_N WDR90_beta-prop_4th Tricorn_2nd PD40 Beta-prop_ACSF4 TRM82_WD B-prop_COPA_B_2nd PAC11 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 ASA1 Beta-prop_WDR41 Cytochrom_D1 Beta-prop_Nup120_160 Beta-prop_NWD2_C Peptidase_S9_N DPPIV_N Beta-prop_ELP1_1st Beta-prop_WDR11_1st TP_0598_N PROPPIN WD_LRWD1 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 125342181
NCBI-ProteinID: XP_048190278
LinkDB
Position
25:complement(3841991..3847875)
AA seq 351 aa
MAAPAAAVGPSALGPSGPGSLAAWSAVSGGPSRYVLGMQELFRGHSKTREFPAHSAKVHS
VAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASG
DKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQ
FKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPTGRYFA
TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDK
LWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS
NT seq 1056 nt   +upstreamnt  +downstreamnt
atggctgcgccggcggcggccgtggggccctcggcgctgggcccgagcggccccggctcg
ctggccgcctggagcgctgtgagcggcggcccgtcgcgctacgtgctgggcatgcaggag
ctgttccgcggccacagcaagacgcgcgagttccccgcacacagcgccaaggtgcactcg
gtggcctggagctgcgacggccgccgcctggcctcgggctccttcgacaagacggccagc
gtcttcctgctggagaaggaccggctggtcaaagagaacaactacaggggccatggcgac
agcgtggaccagctctgctggcatcccagcaatcctgacctgttcgtcactgcctctggg
gataaaaccattcgcatttgggatgtgagaactacaaagtgcatcgccaccgtgaacacc
aaaggggaaaacattaacatctgctggagtcctgatgggcagaccatcgccgtgggcaac
aaggacgacgtggtcaccttcattgatgccaagacgcaccgctccaaagcagaggagcag
ttcaagttcgaggtgaatgagatctcctggaacaacgacaacaatatgttcttcctgacc
aacggcaacggctgtatcaacatcctcagctacccagagctgaagccggtgcagtccatc
aatgcccacccctccaactgcatctgcatcaagtttgaccccacgggccggtacttcgcc
acaggtagcgctgatgccctggtcagcctctgggacgtggacgagttggtgtgcgtgcgc
tgcttctccaggctggattggccggtgaggactctgagcttcagccatgatgggaagatg
ctggcgtcggcatccgaggaccatttcatcgacatagctgaggtggagacaggggacaag
ctgtgggaggtacagtgcgagtccccgaccttcaccgtggcctggcaccccaaaaggccc
ctgctggccttcgcctgcgacgacaaggatggcaagtacgacagcagccgggaagccggc
acggtgaagctgttcgggcttcccaacgactcctga

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