Perognathus longimembris pacificus (Pacific pocket mouse): 125342391
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Entry
125342391 CDS
T08928
Symbol
Smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03082
ATP-dependent chromatin remodeling
plop04714
Thermogenesis
plop05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125342391 (Smarcc1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125342391 (Smarcc1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125342391 (Smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125342391 (Smarcc1)
03036 Chromosome and associated proteins [BR:
plop03036
]
125342391 (Smarcc1)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125342391 (Smarcc1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125342391 (Smarcc1)
PBAF complex
125342391 (Smarcc1)
GBAF(ncBAF) complex
125342391 (Smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
125342391
NCBI-ProteinID:
XP_048190463
LinkDB
All DBs
Position
26:9852917..9940404
Genome browser
AA seq
1100 aa
AA seq
DB search
MAAAAGGGPGAAAGAGGAAAAAGLAIYRRKDGGPASKFWESPDTVSQLDSVRVWLGKHYK
KYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHILGA
AYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLARPNIYLIPDIDLKLANKL
KDIIKRHQGTFTDEKSKASHHVYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSYDTWV
HSSDVDAEIEEPPIPEKPWKVHVKWILDTDIFNEWMNEEDYEVDENRKPVSFRQRISTKN
EEPVRSPERRDRKASANSRKRKHSPSPPPPTPAESRKKSGKKGQASLYGKRRSQKEEDEQ
EDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGGKEDE
DPSKGDQSRSVDSGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTP
EIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESR
PMAMGPPPTPHFNVLADTPSGLVPLHLRSPQIPAAQQMLNFPEKNKEKPIDLQNFGLRTD
IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKMETD
ADGQQPEKAKNKMENETEEGEKAQDGENEKSSEKEQDSEVSEDIKSEEKETEENKELSDT
CKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQM
KKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQQH
SQNPQQAHPHSGGPGLAPPGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPGPM
MPGQPMPGRMIPTVAANIHPAGTGPAPPGMPAMPGNLLGPRVPLTAPNGMYPPPPQQQPP
PPADGVPPPPAPGPPASVTP
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggaggcgggccgggagcggcggcgggcgcggggggcgcggcggcg
gcggcgggtctggccatttatcggcggaaggacggcgggccggcgagcaagttttgggag
agcccggacacggtgtcccagctggactcggtgcgggtctggctgggcaagcactacaag
aagtatgttcatgcagatgctcctaccaataaaacactggcaggattggtagtgcagctt
ctccagttccaggaagatgcctttgggaaacatgtcaccaacccggccttcaccaaactc
cctgcaaaatgtttcatggattttaaagctggaggcaccttatgtcacattcttggggct
gcttacaaatataaaaatgaacagggatggaggagatttgatctacaaaatccatctcga
atggatcgtaatgttgaaatgtttatgaatattgaaaaaacattggtgcagaacaattgt
ctggcaagacccaacatctacctcattccagacattgatctgaagctggctaacaaattg
aaagatatcatcaaacggcatcagggaacatttactgatgagaagtcaaaagcttcccac
cacgtttatccatatccttcctcacaagaggatgaagaatggttgagaccagtgatgaga
aaagataagcaggtattagtgcactggggcttttacccagacagctatgatacttgggtc
catagtagtgatgttgatgctgaaattgaagagccaccaattccagaaaaaccctggaag
gttcatgtaaaatggattttggacactgatatttttaatgaatggatgaatgaggaagat
tatgaagtagatgaaaacaggaaaccagtgagctttcgtcagcgaatttcaacaaagaat
gaagagccagtcagaagtccagagagaagagatagaaaagcatcagccaattcaagaaag
aggaaacattccccttcgccaccacctcccacacctgcagaatcacgaaagaagagtgga
aagaaagggcaagctagtctttacgggaagcgcaggagtcagaaagaagaagacgagcaa
gaagatcttaccaaggacatggaagatccaactcctgtacccaatatagaagaggtggta
ctccccaaaaacgtgaacccaaagaaagacagtgaaaatacacctgttaaaggaggaact
gtagcagatctagatgaacaggatgaagaaacagtcacgacaggaggaaaggaagatgaa
gatcctagtaaaggtgatcagagccggtcagttgactctggtgaagataatgtaacagag
cagaccaatcacattattatccccagctatgcatcctggtttgattataactgcattcat
gtgatagaacggcgtgcgcttccagagtttttcaatggaaaaaacaaatcaaagactcca
gaaatatacttagcctatcgaaactttatgattgacacatatcgtctaaaccctcaagag
tatttaaccagcactgcttgtcgaaggaacttaactggggatgtgtgtgctgtgatgagg
gttcatgcctttttagagcaatggggacttgttaattaccaagttgatccagaaagtcga
cctatggccatgggaccccctcctactcctcacttcaatgtattggcggataccccctct
gggcttgtgcctctgcatcttcgatcaccacagattccagctgctcagcagatgttaaat
tttcctgagaagaacaaagaaaaaccaattgacttgcagaactttggtcttcgtactgac
atttactccaagaaaacattagctaagagtaaaggtgctagtgctggaagggagtggacg
gaacaggagacccttctgctcttagaggctctggaaatgtacaaggatgattggaacaaa
gtatcagaacatgtgggaagccgtactcaggatgaatgcatactccactttttgaggctt
cccattgaagacccctaccttgagaattccgatgcttctctgggccctctggcctaccag
cccgtccctttcagccagtctggaaatcctgtcatgagtaccgttgcttttctggcatct
gtggtggaccctcgtgtggcatctgctgcagccaaagcagcactagaggagttttctcgg
gtccgggaggaggtgccactggaactggttgaagctcatgtcaagaaagtacaggaagca
gcccgcgcctccgggaaggtggaccccacctatggcttggagagtagctgtattgctggc
actgggcccgatgagccggagaagcttgaaggatctgaagaggaaaagatggaaacagat
gctgatggtcagcagcctgagaaggcaaaaaataaaatggaaaatgaaaccgaggaaggt
gaaaaagcccaagatggagaaaatgagaaaagtagtgaaaaggaacaagatagtgaagtc
agtgaggacattaaatcagaagaaaaggaaactgaagagaacaaggaactctctgataca
tgtaaagaaagagaaagtgataccggaaagaagaaagtagaacatgagatttctgaagga
aatgttgccacagccgcagcagctgctcttgcctcagctgccaccaaagccaagcacctg
gctgctgtggaagaaagaaaaatcaagtccctcgtagctctcctggttgagacacaaatg
aagaaactagagatcaaacttcgacattttgaagagctggaaactatcatggacagagag
aaagaagctctggaacaacagcggcagcagttgctcactgagcgccagaactttcacatg
gaacagctgaaatatgcggagttaagagcgagacagcaaatggagcagcagcagcagcac
agccaaaaccctcagcaggcacacccacactcaggaggacctggcctcgcccctcccgga
gcagcaggacacccgggcatgatgccacaccagcagccccctccctaccctctgatgcac
caccagatgccaccgcctcatcccccccagccaggtcagataccaggcccaggtcccatg
atgccggggcagcccatgccgggccgcatgattcccactgttgcagccaatatccacccc
gctgggaccggccctgcccctccggggatgcctgcaatgcctggaaacctcttaggaccc
cgggtacccctcacagcaccgaatggcatgtatccccctccgccacagcaacagccacca
ccacctgcagatggggtccctccgccgcctgctcctggccctccggcctcggttactcct
tag
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