Perognathus longimembris pacificus (Pacific pocket mouse): 125342483
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Entry
125342483 CDS
T08928
Symbol
Scn11a
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
plop04040
]
125342483 (Scn11a)
Ion channels [BR:
plop04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125342483 (Scn11a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
125342483
NCBI-ProteinID:
XP_048190627
LinkDB
All DBs
Position
26:complement(10609330..10645798)
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AA seq
1778 aa
AA seq
DB search
MEDRCYPIIFPDKRNFXPFTADSLAAIEXRLAVQKEKEKRGEQLGPETPLRPQLDLKASR
RLPKLYGDIPRELVAQPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRALFILGPFHPIRS
LAIKISVHSLFSMFIICTVIINCVFMALSRDKTPDTSSARIHLMGIYSFEAVIKILARGF
ILDEFSFLRDPWNWLDSIVIGTAIVAFQTPLTPVRTFRVFRALKAISVVSGLKVIVGALL
RSVKKLVDVMVLTLFCLSIFALVGQQLFMGNLNQKCVKDSCINTTDWNTNESCFVKENKS
KDFIMCGHWLGSRSCPSNSKCNKTQINPDHGFTNFDNFGWSFLAMFRLMTQDSWEKLYRQ
TLRTSGLYYVFFFMMVILLGSFYLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFQEAQQL
LREEKEALVAMGMDRTSLNSLQASSFSPTKRKFFGKKKRKSFFLKQARKDNAPGSDSEEE
SPRNSHLLQQTKRLSQNLPMDLFDEHADPLQRQRALSAVSILTITIQEKEKSQEPCLPCG
ENMASRYLVWNCSPRWLCIKKVLRIIMLDPFTELAITLCIVTNTVFLAMENHQMEENLQT
ILRTGNWVFTGIFIVEMFLKIIALDPYHYFRHGWNIFDCIVALLSFVDVMINLSNQSWSF
LRSFRVLRVFKLAKSWPTLNILIKIIGHSVGALGNLTVVLAIVVFIFSVVGMQLFGNNFG
ALKVGKFCTEKDYSCYRRWHMGDFYHSFLVVFRILCGEWIENMWECMRTHPNNNQPVCII
VFVSIMVIGKLVVLNLFIALLLNSFSNEERYGHPDGEARKTKVQLAMDRFRRAFAFLIRT
LEHFFCKACRRQRLPQPGETTENYVAENKDRNPLVTKMKKGGLKSWEELDGFTPARKTSG
PEYDRIRLAPLAEEEVDVEDSDRDNALSTTVQSEAERQACGPTEETKVPSSPGELAVEMD
VFPEEDATVAIQNLRKKSDAVSVLSECSTVDLHHGMGTLPRMAPPKKQPQRCLPKGLSWC
FRCCGRRKGGSPWTVWWSLRKTCYQIVKHSWFESFIIFVILLSSGTLVFEDVNLNKQGKI
QEFLNCTDNIFTFIFILEMGLKWVAFGFGKYFTSAWCWLDFIIVIVSVVSLIDLKSWRSF
RTLRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVNFFSGKFGR
CINGTDINQYINSTDVANRTQCENSSYQWRNPPVNFDNVGMAYLALLQVATYKGWLDIMD
AAVDSQGKEQQPKFEANVYAYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGGQDIF
MTEEQKKYYNAMKKLGTKKPQKPIPRPLNPCQGFVFDVVTHKVFDVIIMTLIVLNMIIMM
VESNNQPHTKVVLDHLNTAFVVIFTIECLVKIFALRQYYFTNGWNLFDCVVVVLSIISTL
VSYLERHAXSLPPMLFRIIRLARIGRILRLVRGARGIRTLLFALMMSLPSLFNIGLLLFL
VMFIYAIFGMNWFSQVPRASGLDDIFNFETFAGSMLCLFQITTSAGWDGLLDPMLSSSAV
GDPDRRHLRLVAIVYFVSYIIISFLIVVNMYIAVILENFNTATEESTEPLGEDDFDLFYE
LWEKFDPEATQFISYSALSDFADALPEPLRVAKPNKFQFLVMDLPLVSGDRLHCMDVLFA
FTTRVLGDSGGLDTMKAMMEEKFMEANPSRQLYEPIVSTTKRREEEQGAAVIQKAYRKHL
LRAASQVRPPSPASAAAVALCNGELPHVEPARGKVHYD
NT seq
5337 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccgctgctaccccatcatcttcccggacaagaggaacttcnggcccttcacg
gccgactccctggcggccattgagnagcggctcgctgtccagaaggagaaggagaagcga
ggcgagcagctggggcccgagacgccgctccgcccgcagctcgacctcaaggcctcccgg
aggctgcccaagctctacggtgacatcccccgcgagctggtggcccagcccctggaggac
ctggaccccttctaccggaaccacaagacattcatggtactgaacaagaagaggaccatc
taccggttcagcgccaagcgggccttgtttatcctgggcccgttccacccgatcagaagc
ctcgctatcaaaatctccgtccattctttgttcagtatgttcatcatatgtacagtgatc
atcaactgtgtgttcatggctctctccagggacaaaaccccagacacctctagtgcccga
atacatctcatgggaatttacagtttcgaagctgtaataaaaatattagccagaggtttt
atcctggatgaattctcgtttctccgagacccgtggaactggttggattccattgtcatt
ggaacagcgattgttgccttccagacccctctgaccccggttcggacctttcgtgttttc
agagctttgaaagccatttcagtagtgtcaggcctgaaggtcatcgtgggggctttgctg
cgctcggtgaagaagctggtcgatgtgatggtgctcaccttgttctgtcttagcatcttc
gccctggtaggtcagcagctcttcatggggaatttgaaccagaagtgtgtcaaagacagc
tgtatcaatactactgactggaacacgaatgagtcttgctttgtgaaagaaaacaagagc
aaagatttcataatgtgtggccactggcttggtagcagatcttgtcccagtaattcgaaa
tgcaataaaacccaaataaatcctgaccatggcttcacgaattttgacaacttcgggtgg
tctttcctcgctatgttccggctcatgacccaagattcgtgggagaaactttacagacag
acgctgcgcacctcggggctgtactacgtgttcttcttcatgatggtcatcctgttgggc
tccttctacctgctgaacttgacgctggccgtggtcaccatggcctacgaggaacagaac
agaaacgtggccgccgagaccgaggccaaggagaaaatgttccaggaggctcagcagctg
ctccgggaggagaaggaggctctggttgctatgggaatggaccggacatcactgaattcc
cttcaagcatcatccttttcccccacaaaaaggaagttctttggcaagaagaaaaggaaa
tcgttctttttaaagcaagctagaaaagacaatgctccaggatccgactctgaggaggaa
tctcccagaaattcacatcttctccagcaaaccaagcggctgtcccagaatttgcccatg
gatctgtttgatgaacacgcggaccccctgcaaaggcagagagcactgagcgctgtcagc
attcttaccatcaccatacaagaaaaagaaaaatcccaggagccttgtctcccttgtggg
gaaaacatggcgtccaggtacctggtatggaactgtagcccccgctggctgtgcatcaag
aaggtgctgaggatcatcatgctggaccccttcaccgagctggccatcactctctgcatc
gtcaccaacaccgtgttcctagccatggagaaccaccagatggaggagaatctccagacc
atcctgagaacgggcaactgggttttcaccggcattttcatcgtggagatgttcctaaag
atcattgcactcgatccctaccactacttccgccatggctggaacatcttcgactgcatt
gttgctcttctgagctttgttgatgtcatgatcaatctctccaatcaaagctggtctttc
cttcgatctttcagagtgttaagggtcttcaagttagccaagtcctggcccactttaaac
atattgatcaagattatcggccactcggtgggagcgctgggcaatctgaccgtggtcctg
gccatcgtggtgtttattttctcagtggtgggcatgcagctttttggcaataactttggt
gccctgaaggtgggaaaattctgcaccgagaaggactattcgtgctaccggcgctggcac
atgggagacttctaccattccttcctggtggtgttccgcatcctatgcggggagtggatc
gagaacatgtgggaatgtatgcgcacgcaccctaacaacaaccagccggtctgcatcatt
gtcttcgtgtccatcatggtgataggaaaacttgtggtgctcaacctcttcatcgcatta
ctgctcaattccttcagcaacgaggagaggtacggacatccagatggggaggccaggaag
accaaagtccagctggccatggaccggttccggcgggcctttgcttttctgatccgcact
cttgagcatttcttctgcaaggcatgccggaggcaacgtttaccccagccaggagagacg
acagaaaactacgttgctgagaacaaagataggaatcctttggtcaccaagatgaaaaaa
ggaggattaaagtcctgggaggaacttgatggcttcacaccagcccggaagacctcaggc
ccagagtacgatcggattcgactggccccactcgcagaggaagaagtggatgtcgaagat
tcagatagagataatgccttgtccaccactgtgcaatctgaggctgaacgacaggcctgt
ggtcccactgaggagaccaaagtgccgtccagcccaggagaacttgctgtggaaatggac
gtgtttcccgaagaagatgcaactgtggccatacagaacctacggaagaagtccgacgct
gtcagcgtgctctccgagtgcagcacggtggatctacaccacggcatggggactttaccg
agaatggctccccccaaaaagcagccgcagagatgtctgcccaaaggtctcagctggtgc
ttccgctgctgtggccgacgcaagggcggctcgccctggacggtgtggtggagcctgcgg
aaaacctgctaccaaatcgtgaagcacagctggttcgagagcttcatcatcttcgtgatc
ctgctgagcagtggcactctggtgttcgaggacgtcaacctcaacaagcaagggaagatc
caggagttcctcaactgcacggacaacattttcaccttcatcttcatcttggagatgggt
ctcaagtgggtggccttcggattcggcaagtattttaccagtgcctggtgctggctggat
ttcatcattgtgatcgtgtctgtggtgagtctcatcgatttaaagagctggagatctttc
cggaccctccgagcgctcaggcccttgcgggcgctgtctcagtttgaaggaatgaaggtg
gtggtcaacgcgctcatcggcgccataccggcgattctgaacgtgctgctcgtgtgtctc
attttctggctcatattttgcatcctgggagtcaacttcttttccggaaagtttgggagg
tgcattaacggcacagatataaaccaatacataaattccaccgacgttgccaaccgtacc
cagtgtgagaacagcagctaccaatggaggaacccccccgtgaacttcgacaacgtgggg
atggcctaccttgcgctgctccaggtggccacctacaagggctggttggacatcatggat
gctgctgttgactctcaagggaaagaacagcagccgaagtttgaggcgaatgtgtacgct
tacatttacttcgtggtgtttatcatcttcggctccttcttcaccctcaacctcttcatt
ggcgtcatcatcgacaacttcaaccaacagcagaaaaagctaggtggccaggacattttt
atgacagaagagcagaagaaatactataatgcaatgaaaaagttaggaaccaaaaagcct
caaaaacccatcccaaggccgctgaacccatgtcaaggcttcgtgtttgacgtggtcacc
cacaaggtgttcgacgtcatcatcatgaccctcattgtcctcaacatgataatcatgatg
gtggagtccaacaaccagccccacaccaaagtggtcctcgaccacctcaatacggccttt
gtggtcatcttcaccatcgagtgtctcgtcaaaatcttcgctctgaggcagtactacttc
accaatggctggaacttatttgattgtgtggtcgtggtcctttctattattagcacgctg
gtctcctatctggagcgccacgcgnattcccttcctccgatgctcttccgaatcatccgc
ctggcccgcatcggccgcatcctcaggctggtccgaggggcccgggggattcgaaccctg
ctcttcgccctcatgatgtccctgccttccttgttcaacatcggcctgctgctcttcctg
gtcatgttcatctacgccatcttcggcatgaactggttctcgcaggtgcccagggcctcg
ggcctggatgacatcttcaacttcgagaccttcgccggcagcatgctgtgtctcttccag
atcaccacgtcggccggctgggacggcctcctggaccccatgctgagcagctcggcggtg
ggggaccccgatcgccgtcacctccgccttgtggccatcgtctacttcgtcagctacatc
atcatcagcttcctcatcgtggtcaacatgtacatcgccgtcatcctggagaacttcaac
acggccaccgaggagagcacggagcccctgggcgaggacgacttcgacctcttctacgag
ctctgggagaagttcgaccccgaggccacgcagttcatctcttactcggccctgtccgac
ttcgccgacgccctcccagagcccttgcgggtggccaagcccaacaagttccagttcctg
gtgatggatctgcccctggtgagtggagaccgtctgcactgcatggatgttctcttcgcc
ttcaccacccgggtgctgggggactccgggggcctggataccatgaaggccatgatggag
gagaagttcatggaggccaatccctcccgccagctctacgagcccatcgtcagcaccacc
aagaggagggaggaggagcagggggccgctgtcatccagaaagcctaccgcaagcacctg
ctcagggcggcctcccaggtccggcctccctccccggcctccgccgccgccgtcgccctc
tgcaatggagagctgccccacgtggagccggccaggggcaaagttcactacgactga
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