Perognathus longimembris pacificus (Pacific pocket mouse): 125342599
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Entry
125342599 CDS
T08928
Symbol
Col7a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04382
Cornified envelope formation
plop04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125342599 (Col7a1)
09158 Development and regeneration
04382 Cornified envelope formation
125342599 (Col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Pur_ac_phosph_N
VWA_2
Kunitz_BPTI
Interfer-bind
Fndc10
Motif
Other DBs
NCBI-GeneID:
125342599
NCBI-ProteinID:
XP_048190837
LinkDB
All DBs
Position
26:9495579..9531664
Genome browser
AA seq
2925 aa
AA seq
DB search
MRLWLLMVVLCTWILTGVPGVWAQHRERVTCTRLYAADIVFLLDGSSSIGRSNFREVRGF
LEGLMLPFSGVASAQGVRFATVQYSDDPQTEFGLDAISSGADAIRAIRELSYKGGNTRTG
AALLHVADHIFLPHLARPGVPKVCILITDGKSQDLVGPAAQKLKGQGVKLFAVGIKNADQ
EELKQVASQPTNDFFFFVNDFSILRTLLPLISRRVCTTAGGVPVTLPPDDSTSGPRDLVL
SEPTSQSLRVQWTAASGPVTGYKIEYTPLTGLGQPLPSERREVNVPAGDTSILLQGLRPL
TEYQVTVFALYANSLGEAVRGTARTTAEEGLELTVQNTTAHSLLVAWRRVPGATGYRVTW
RVLGGGPTQQQELSPGHGSTLLRDLRPGTDYEVTVRPLFGQRMGPATSVTARTDFSVEQT
LRPTILGPTSILLTWNLVPEARGYRLEWRRESGLEPAQQVMLPPDVTRYQLDGLQPGTEY
RLTLYTLLEGREVATPAAVVPTGPEQPGSSVMDLQAIDLPGRRVRVTWNPVPGASEYRIT
VRGTQGVERTLVLPGGQTAFNLDEVRPGLTYTVRVSARVGAREGGAGILTIRRDPETPLA
VPGLRVVASDATRIRVAWGPVPGASGFRIRWRTGSGPESSQTLPPDSTTTDLLNLQPGAS
YQVSVSALRGREESPPAVIVAQTDAVGPVRTVHVTQTSSSSVAIAWTRVPGVTGYRVSWR
SGQGPEDSQLISGEATVAQLDGLEPDTEYTVHVRAHVAGVDGAPASVVVRTTPEPVGSVS
KLQILNASSDVLRVTWVGVTGATAYRLAWGRSEGGPTRQQVLPGNTESAEIRGLEGGVSY
SVRVTALVGDREGAPVSIVVTTPPQVPTPLETLQVVGRGEHSLRLHWERVPGAHGYHLRW
RAEGGQEQSRVLGAELSSYDLDGLEPATLYRVQLSVLGPTGEGPPREVTAYTESPRVPSP
ELRVVDTSINSVTLAWDPVPGTSSYILSWRPLRGTGHEVPGASQTLPGSSSSQRVTGLEP
GVSYTFSLTPIQRGARGPEASVTQNPACPRGLMDVVFLLHTTRDNAHRAEAVKRILERLV
SALGPLGPRAVQVGLLPYSHRPSSLFPLNSSHDLGLILQKIRDIPYTDPSGNNLGSAVIT
AHRYLLAPDAPGRRPQAPGVMVLLVDEPLRSDIFSPIREAQAAGLKVMTLGLAGADPEQL
RRLVPGVDPIQNFLAVDDGPSLDQAAGDLAGALCQAAMTTQPHPEPCTVHCPKGQKGEPG
ATGLNGQAGPPGPPGLPGRTGSPGPPGPPGSAITKGERGFPGADGPPGSPGLPGTPGIKG
SPGWPGPRGEPGERGPRGPKGEPGEPGQITGGEGTGIPGRRGDPGPPGPPGLRGPSGDPG
PRGPLGLPGTSVKGDKGDRGERGPPGPGFGKTTEGEPGLPGLPGSPGPQGPLGPPGEKGE
KGDCEDGASGIPGQPGTPGEPGLRGLPGPKGNQGLKGTPGEIGEKGERGLPGPAGPQGPT
GIAGRPGAEGPEGPPGPPGRRGEKGEPGRPGDPAVVGPGGAGAKGEKGDVGPTGPRGAAG
AKGEQGAPGLALPGDPGPKGDPGARGPIGLTGRAGTPGDPGTPGEKGDPGRPGSPGPVGP
RGRDGEAGEKGDEGAPGEPGLPGKAGERGLRGTPGVRGPVGEKGDQGDPGEDGRNGSPGP
KGDRGEPGSPGPPGRLVDGGLEGREKGEPGDRGQEGPRGPKGDPGPAGAPGERGVDGLRG
PPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAPGPPGLHGAAGKAGEPGRDGLPG
LRGEHGPPGLPGPPGAPGKAGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGHEG
PKGERGAPGSPGPQGPPGLLGQVGPPGQGFPGVPGSVGPKGDRGETGSKGEQGLPGERGL
RGEPGGTVNAERLLETVGIKASALREIVDTWDESSGSFLPVPERQRGPKGNPGLPGKDGS
IGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPGLPGQAGGIGEAG
RPGERGERGEKGERGEQGRDGFPGPPGLPGPPGPKVAIDEADPGLAGKQGPPGPKGAKGD
PGSDGDRGSKGDRGTPGIKGDQGEPGQRGPNGSPGLPGERGIAGPEGKQGLQGPRGAPGP
VGGHGDPGPPGAPGLAGPAGPHGPSGLKGEPGETGPPGRGLPGPTGAVGLPGPPGPSGLV
GPQGSPGLPGQVGETGKPGAPGRDGTNGKDGDRGSPGVSGSPGLPGPVGPKGEPGPIGTP
GQAVVGPPGAKGEKGAPGGLAGDLLGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQ
KGAPGLKGHKGDPGVGAQGPPGPSGLPGMKGDVGPPGPPGAPGIVGFPGQPGPRGEMGQP
GPGGERGLAGLPGREGPPGPLGPPGPPGSVGNPGAAGLKGDKGDPGVGLPGPRGERGEPG
VRGEDGHPGQEGARGLVGPPGSRGDRGEKGDTGSAGIKGDKGDSAVIVGPPGIPGAKGDR
GERGPRGIDGDKGSRGDVGDPGDKGVKGEPGDKGSAGPVGARGFTGPKGDPGATGVPGDP
GAPGKDGAPGFRGEKGDAGFTGPRGFKGEQGVKGACGLDGEKGDKGEAGLPGRPGLAGRK
GETGEPGMPGQSGAPGKEGLIGPKGDRGFDGQLGPKGDQGEKGDRGPPGIGGFPGPRGSE
GSSGPPGPPGTVGPKGPEGLQGQKGERGPPGESVMGSPGAPGSPGERGEQGRPGPAGPRG
EKGEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLSSYAADAAGPQSHRVPVLRVSH
VEEEDQTPPEDDELSDYSEYSVEEYQDPEVPWDDEDPCSLPLDEGSCTAYTLRWYHRAGP
GGAACHPFVYGGCEGNANRFGTREACERRCPPRVTGSQRTGAAQS
NT seq
8778 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgtggcttctgatggttgtgctctgcacctggatcctaacaggggtgcccgga
gtttgggcccagcacagggagagagtgacctgcacacgcctttatgctgccgacatcgtg
ttcttattggacggctcctcatccattggccgcagtaacttccgtgaagtccggggcttt
ctagaggggctcatgctgcctttctctggggtagccagtgcccagggggtccgctttgct
acggtgcaatacagcgatgatccacagacagaatttggcctggatgccataagctcgggg
gctgatgcaattcgtgccatccgggagctcagctacaaggggggtaacacccgcacaggg
gctgcacttctccatgtagccgaccatatcttcctgccccatctggcccgacctggtgtt
cccaaggtctgcatcctcatcacagatgggaagtctcaggacttggtggggccggctgct
cagaaactcaaggggcagggggtcaagctatttgctgtaggaatcaagaacgcggaccaa
gaggaactcaagcaagtggcttcacagccgaccaacgacttcttcttcttcgtcaatgac
ttcagcattttgagaacactcttaccactcatttcccggagagtgtgtacaacggctggt
ggtgtgcctgtcactctacctccggatgactctacctctggtcctcgggatctagtattg
tccgagccaaccagtcaatccttgagagtacagtggacggcggctagcggtccagtgaca
ggctataaaatcgagtatacccctctgaccgggttgggacagccactacccagcgagcgg
cgggaggtgaatgtccctgctggtgacaccagcatactactacaaggtctccggccactg
actgaataccaggtgactgtgtttgctctctatgccaacagcctcggggaggccgtgcga
gggacagctcgcaccactgcggaagaagggctagagctgaccgtccagaataccacagcc
cacagcctcctggtagcttggcggagggtgccaggtgctaccggctaccgggtgacatgg
agggtccttggaggtgggcccacacaacagcaggaactgagccctgggcatgggtcaacg
ttgctgcgtgatctgaggcctgggacagattatgaggtgactgtgaggcccctctttggc
caaagaatgggacctgccacttccgtgactgctcgcacggacttttccgttgagcagact
ctacgtcccaccattttgggtcccacatccattctcctaacctggaacttggtgcccgag
gcccgtggctaccggctggaatggcgtcgtgagagcggcctagagccagcccagcaggtg
atgctaccacctgatgtgacccgctaccagctggatggactccagccgggcactgagtac
cgcctcacgctctacaccctgttagagggtcgtgaagtggccacgcctgcagccgtggtt
cccactgggccagagcaacctgggagttctgtgatggatttacaagccattgatctacct
ggacgacgggtacgagtgacctggaacccggtccctggggcctctgaataccgcatcacc
gtgcgaggcactcagggagttgagcggaccctggtgcttcctgggggtcagacagccttc
aatttagatgaagttcgacctggccttacctacactgtgcgtgtatctgctcgagtgggt
gccagggagggaggtgccggtatcctcactattcgccgagatccagaaaccccacttgct
gtcccaggactacgggttgtggcctcagatgctacgagaataagagtcgcgtgggggcct
gttcctggagccagtggatttcggattcgctggaggacaggcagtggtccagagtccagc
cagacattgcctccagattctactactactgacctcctgaatctacagcccggagcctcc
taccaggtgtctgtgtccgcacttcgaggaagagaagagagtcctcctgcggttattgtg
gctcaaactgacgcggtgggcccagtcaggacggtccacgtgacgcagactagcagctcg
tcggttgctatcgcatggaccagggttccgggtgtcactggatacagagtttcctggcgc
tcaggccaaggtccagaggactctcagttgatttctggggaggccacagtggctcagctg
gatgggctagaaccagataccgagtacacagtccacgtgagggcccacgtggctggtgta
gatggagcccctgcctctgtggttgtgagaaccacccctgagcctgtgggcagtgtgtca
aagctacagatactcaatgcttccagtgacgttctgagagtcacctgggtaggggtcact
ggtgccacggcttacagactggcttggggccggagtgaaggtggccccacgagacagcag
gtactcccaggaaacacggagtccgctgagatccgagggctggaaggtggagtcagctat
tccgtgcgagtgaccgcgctggtgggagaccgagagggtgcacctgtctccattgtcgtc
accacaccaccccaggttcccacacccctggagacccttcaagttgtggggcgcggggaa
cactcgctgaggctgcactgggagcgggttcctggagcgcatggctaccacctgcgctgg
agagctgagggtggccaggaacagtccagggtcctaggagctgagctcagcagctatgac
ctggatgggctggagccggcgacactgtaccgtgtgcagctgagtgtcttgggacccacg
ggagaagggccccccagggaagtgacggcatacactgagtctccccgtgtcccaagccct
gaactccgtgtggtcgatacctccatcaattcagtgaccctagcttgggacccagtgcct
ggaacatccagctatatcctatcctggcggccactccgaggcactggccacgaagtgcct
ggggcttcacaaacacttccagggagttccagctcccagcgggtgacaggcttggagccc
ggtgtctcctataccttctctctcacacccatccagaggggtgcacggggtcccgaggcc
tctgtcacacagaatccagcgtgtccccggggtctgatggacgtggtgtttctactgcac
accactcgagacaacgctcatcgcgccgaggctgtgaagcggattctggagcggctggtg
tctgcacttgggcctcttgggccacgggctgtccaggttggcctactgccctacagccat
cggccctcctccctgttcccattgaatagttcccatgatcttggcctcatcttgcagaag
atccgggacattccctacacggacccaagtggaaacaacttgggctcagcggtgatcaca
gctcaccgatacctcttggcacccgatgctcctgggcgccgtccacaagcgcccggggtg
atggttctgttggtggatgagccattgagaagtgacatcttcagcccaatccgtgaggcc
caggctgctgggctcaaggtgatgacgttgggtttggcgggagcggatccggagcagctg
cgtcgcttggtgccaggcgtggatcccatccagaacttcttggcggtggatgatgggcca
agcctggaccaggcagccggtgatttggcaggagcgctgtgtcaggcagccatgacgact
cagccacatccagagccttgcaccgtgcactgcccaaagggtcaaaagggggaacctgga
gcaacgggcctgaatggacaagctgggcctcccggaccccctgggctcccaggaagaact
ggttctcctggcccccctgggccccccggaagtgccattacaaaaggcgagaggggtttc
cctggagcggatggacccccgggaagtcctggtctccctgggactcctggcataaagggc
tccccaggatggcctggtcctcgtggggaaccgggagaaagagggcctcgaggcccaaag
ggggagccgggagagcctgggcagatcactggaggggaagggacagggattcctggcaga
agaggggacccaggacctccgggcccccctggacttcgtggcccttcaggagacccagga
cctcggggtcccctcgggcttcctggaacatctgtgaagggtgacaaaggtgatcgtggg
gaacggggaccccccggaccagggtttggtaaaactacagaaggagaacctggacttccg
ggccttcccggaagtcctggaccccaaggcccacttggccctcctggagagaaaggagag
aagggtgactgtgaggatggggcctcaggtatcccaggacaaccggggaccccgggtgag
ccgggccttcggggacttcctggccccaaaggtaaccaaggcttaaaaggaaccccgggt
gaaattggagaaaaaggtgaacggggactccccggccctgcgggaccccaggggccgacg
ggaattgcggggcgccctggagccgagggtcctgagggtccgccaggaccccctggccgc
cgaggagagaagggagagcctggtcgccctggggacccagcagtggtgggtcctggtggt
gctggagccaaaggagaaaagggagatgtggggcctactggtcctagaggagctgctgga
gccaaaggggaacagggcgcacctgggctagctcttcctggagaccccggccctaaggga
gatcctggagcccggggtcccattggcctcactggcagagcaggaactccaggtgaccca
gggactcccggagaaaagggagaccctgggcggcctggctctcccggacctgtgggcccc
cgaggacgtgatggtgaagctggagagaaaggtgacgaaggtgctccgggtgagccaggt
ttgcctggaaaagcaggcgagcgaggccttcgggggacacctggagtccggggtcccgtg
ggtgaaaagggagaccaaggagatcctggagaggatggacgaaatggcagccccggacct
aagggtgatcgtggggagccgggttctcctggtccccctggacggctggtggacggggga
ctggaaggcagagagaagggagaacctggagaccgtgggcaagagggtcctcgaggaccc
aagggtgaccctggtcccgctggagcccccggggagaggggcgtggatgggctccgggga
cctccaggcccacagggagatcccggggttcgaggcccagcaggagaaaagggtgaccga
ggcccccctggtctggatggccgcagtgggttggatggaaagccaggagcccccggccct
cctgggctgcatggtgctgcaggcaaagcgggggaaccagggagagatgggctccctggc
ctccgaggagaacatgggccccctggtctccctggccctcctggagcaccgggaaaggcg
ggagaagatggcaaacccggcctgaatggaaaaaacggagagcctggagaccctggagaa
gatgggagaaagggggaaaagggagattcaggagcccctgggagagaaggtcacgaaggc
cccaagggtgagcgcggagcacctgggagtcccggaccccagggtcccccgggtctcctg
ggacaggtgggccctcctggccagggctttcctggagtccccggaagcgtaggtcccaag
ggtgaccgcggcgagactggctccaaaggcgaacagggccttcctggagaacgaggattg
agaggagaacctgggggcacggtgaatgcagagcggttgctggagacagtcggcattaag
gcatctgctctgagggagatcgtggatacctgggatgagagttctggaagcttcctgcct
gtacctgagcgacagcgtggtcccaagggaaacccgggcctgcctggcaaagatggctcc
attggttttcccggagaacgagggctgaagggagatcgcggagaccctggtcctcagggg
cctcctggcctggcccttggagagaggggacccccagggccccctggccttgctggggag
cctgggaaacctggcatccctgggctccctggccaggctgggggtataggagaggcagga
aggccgggagagagaggagaacgaggagagaaaggcgagcgaggagaacagggcagagat
ggctttcctggccccccagggctccctggtcctcctggcccgaaggtggccatcgatgag
gcagatcctggactcgcggggaaacaaggacctcctggacccaagggtgctaagggggac
ccaggcagcgatggtgaccgaggttccaaaggagaccggggtacgccaggcatcaaggga
gaccaaggcgagcccggacagagaggtcccaatggcagcccaggtttaccaggagagcgt
ggtatagctgggcccgaagggaaacagggtctacagggtccgaggggcgcccccggccca
gtgggtggccatggggaccctggacctcccggtgccccgggtctcgctggtcctgcaggg
ccccacggaccttctggcctaaagggggagcccggagagacaggacccccaggccggggc
cttcctggacctactggagccgtgggactccctggtcccccgggcccctcgggcctggtg
ggccctcaggggtcaccaggtttgcctggacaagtgggggagacagggaagccgggagcc
ccgggtcgtgatggtaccaacgggaaggatggagacagaggaagccctggggtgtcagga
tcaccaggtctgccaggccctgttggacccaaaggagaacctggacccatagggacccct
ggacaggcagtggtcgggcctcctggagcaaaaggagagaagggagccccaggaggcctt
gctggagacctgctgggggagccgggggccaagggagaccgaggattgccagggcccagg
ggcgagaagggtgaagctggccgggcaggagagccgggagaccccggggaagatggtcaa
aaaggggctcccggacttaaaggtcacaagggtgacccaggagttggggcccaaggtccc
cctggaccatctggtcttccaggtatgaagggagatgtgggccctcccggccctcctgga
gctcctggtattgtggggttccctggccagccaggtcctcgtggagaaatgggccagcca
ggccctggtggagagcgggggctagcaggccttccagggagagaaggccccccaggccct
ttggggccacccggaccaccaggatcagtgggaaaccccggggccgctggactcaaagga
gacaagggagaccctggagtggggctgcccgggccccgaggggagcgtggagagccaggt
gtccggggtgaagatggccaccccgggcaggaaggagcccgcggactcgtgggccccccc
ggcagccgtggtgaccgaggggagaagggcgatactggctcagcagggatcaaaggtgac
aagggtgactcggctgtgattgtggggcctccaggaattccgggtgccaaaggggacagg
ggtgaacgaggacctcggggcatagatggtgacaaaggatctcggggtgacgtcggagat
cctggtgacaagggtgtgaaaggagaacccggcgacaagggctcagctggccccgtggga
gcgcgtggattcacaggacccaagggggatcctggtgctacaggagtccctggtgacccg
ggagccccaggaaaggatggagcccccggtttccgaggagagaaaggagatgctggcttc
acgggtccccggggcttcaagggcgagcagggcgtgaagggagcctgcggccttgatgga
gaaaagggagacaagggagaagccggtctccccggccgccctgggctggcaggacggaaa
ggagagacgggggagccgggtatgccaggccagtccggagctcctggcaaggaaggcttg
attggtcccaagggtgaccgaggctttgatgggcagttgggacccaaaggtgaccagggt
gaaaaaggcgatcgggggcccccaggaattggaggcttcccaggacccagaggcagtgag
ggctccagtggcccccctggacctcctggaactgtaggtcctaaaggccctgaaggactt
cagggccagaagggtgagcgcggtccccctggggagagtgtgatgggatcccctggggct
cctgggagccctggtgagagaggggagcagggacggccagggcctgccggcccccgcggc
gagaagggagaggctgccctgactgaggatgacatccggggctttgtgcgtcaggagatg
agtcagcattgtgcctgccagggccagtttattgcctctggatcacgacccctgtccagt
tacgctgcagatgcggctggcccccaatctcaccgggtacctgtgctccgggtctcccat
gtagaggaggaagaccagacgccccctgaagacgacgaactctccgactactctgaatac
tctgtcgaggaataccaggaccctgaagttccttgggatgacgaagacccttgctccctg
cccctggacgagggctcgtgtaccgcctacaccctccgctggtaccatcgagccgggcca
ggcggcgcggcctgtcacccctttgtctacggcggttgcgaagggaatgccaaccgtttc
gggactcgtgaggcctgtgagcgccgttgtccaccacgggtgactgggagccagagaaca
ggtgctgcccagagctga
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