Perognathus longimembris pacificus (Pacific pocket mouse): 125342647
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Entry
125342647 CDS
T08928
Symbol
Xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03008
Ribosome biogenesis in eukaryotes
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125342647 (Xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
125342647 (Xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125342647 (Xrn1)
03009 Ribosome biogenesis [BR:
plop03009
]
125342647 (Xrn1)
03016 Transfer RNA biogenesis [BR:
plop03016
]
125342647 (Xrn1)
03036 Chromosome and associated proteins [BR:
plop03036
]
125342647 (Xrn1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125342647 (Xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
125342647 (Xrn1)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
RNases
125342647 (Xrn1)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125342647 (Xrn1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125342647 (Xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
125342647
NCBI-ProteinID:
XP_048190900
LinkDB
All DBs
Position
26:2453140..2506147
Genome browser
AA seq
1732 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERVIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINENGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEAKNYKEKKKSKGQENSLCWAALDKNESQVVASKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLAAQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISALKIHFELGKPFKPFEQLLAVLPAASKSLLPTCYQHLMTNEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDKDTEFTYSSPWPEKFPDIERCCTRYEIISLDAWRIDINKNKITNVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEIFVDAESDEPSIENVASSVLGKSVFVNWP
HLEEARVVAVSDGEIKFYLEEPPGTQKVYLGRTPPPSKVVHLGDKEQSNWTKEVQGISDQ
YLRRKGIIINETFALVYAQLLTGRKYQVNQNGEVRLEKQWSKQVLPFVYQTLVKDIRAFD
SRFSSIKTLDDLFPIRSTVFMLGTPYYGCTGEVQDSGDVIAEGRIRVVFSIPCEPNLEAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEE
ENGAEKVQEITTWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKSNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADILF
EVLFDEEFYGGLTIRCSPGRGYRLPTSALVNLSHGNRSETGNQKLTAIVKPQPAVNQCSS
NSSISSGHLGGLNHSPQSLFVPTQVPAKDDDEFSNIWQSLQGSGKIQHFQPVLQEKGTVL
PQEISQVTQQHKSGFSDSNVKYQQRKHDPHRKFKEECRSPKAECRSQKMSSKQTFGGSAK
CNNIKLLKRNESPGVTETQKPSSGMENFLASLNISKENEVQSSHHGEPPSEEHLSPQSFA
MKGTRMLKEILKIDGSDSMDRTNELKQFGSEAASSSSRKDEYGLSSQTKQNKKLAPYTHK
PPSANEYQSVPSVDGVCWSGQIPPVSTPVTELSRICSLVGMPQPDFSFLRTPQTMTVCQV
KLSNGLLVLGPQCPSENEAKEKAALFALQQLGSLGVNFPFPPPIFPNYPPAVPPGTIPPV
YPQPTGWDHYGSNLAFGAAAAMMPPSSHLLGSVPWRPPVPAPGRPFHPTSYSGTVPGAGG
LPGSTHNQFIPLQVTKKRVANKKTFENKEAQSSQAASLAPSKPGSSEVTKVVPQESSSAS
LQSSQAAQPVSPQAEAATPAPSRAPQKSAPSSSARRKSRKLAVNFGISKPSE
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccgctggatctcggagcggtacccctgcctcagcgaggtg
gtgaaggagcaccagattccagaatttgacaatttgtacctggacatgaacggaattata
catcagtgttcccaccctaacgacgatgacgtgcacttcaggatttccgatgataaaatc
tttactgatattttccactacttggaagtgctgtttcgaattattaaacctaggaaagtg
ttttttatggctgttgatggtgtggctcctcgagcaaaaatgaatcagcaacgagggagg
cgattcaggtcagccaaggaagcagaagacaaaatcaaaaaggccttagagaagggagaa
actcttccaacagaggccagatttgattccaactgcattacaccagggactgaattcatg
gccaggttgcatgaacatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgatcatgcttggattaacaagtcatgaggcacac
ttctctctcttacgagaagaggttcgatttggtggcaagaaaacacagagggtatgtgcg
ccagaagaaaccacatttcacctcctacacttgtctctgatgagagaatatattgactat
gagttctcagtattaaaagaaaaaatcacatttaaatatgatattgaaagagttatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactccctcttctttatggaacatacattaccattctgccagaa
ctcggaggttatattaatgaaaatgggcatctcaatttacctcggtttgagaaatactta
gtgaaactatcagactttgatcgagaacacttcagtgaagttttcgtggacctgaagtgg
ttcgaaagcaaagttggtaacaagtacctcaatgaagcagcaggcattgcggctgaagaa
gccaaaaactataaggaaaagaaaaaatcaaagggccaggaaaattctctgtgctgggct
gctttagacaaaaatgaaagccaagtggtagcttctaaggataatttagaagatgaaacc
gaagatgatgatctatttgaaactgaatttagacaatataaaagaacatattacatgaca
aagatgggagttgatgtagtctctgacgactttctggctgcccaggctgcatgttatgtt
caggcaatccagtggattttgcactactactaccatggagttcaatcgtggagctggtat
tacccataccattatgcaccttttctgtctgatatccgcaacatcagtgcactcaaaatc
cactttgaacttggaaaaccattcaagccatttgagcagctacttgcggtccttccagca
gctagcaaaagtctgcttcctacatgctaccagcacttgatgactaatgaagactcacca
attatagaatattacccccctgattttaaaactgatctaaatggaaaacaacaggaatgg
gaagctgtggttttaatacctttcattgatgagaagcggttattagaagccatggaaaca
tgtaaccactccctcaagaaggaagagaggaaaagaaaccaacacagcgaatgtctaatg
tgttggtatgataaagacacagagttcacctattcctctccatggccagaaaagttccct
gacatagagcgatgttgtacaaggtatgaaatcatatctttagatgcttggcgtatagac
ataaacaagaacaaaataaccaatgttgaccagaaggcattgtatttctgtggattccct
actctgaaacacatcaaacataaatttttcttgaagaaaagtggtgttcaggtatttcag
caaagcagtcgtggagaaaacatgatgttggaaatctttgttgatgcagaatcagatgag
cctagtatagaaaatgtagcttcatcggtgcttggaaagtctgtctttgttaattggccc
caccttgaagaagctagagttgtggctgtatcagatggcgaaattaagttttacttggaa
gaacctccaggaacgcagaaggtttatttgggaagaactcctccaccatctaaagttgtt
catcttggagataaagaacagtctaactggactaaagaagtacaaggcatttcagaccaa
tacctgagaagaaaaggaataataataaatgaaacatttgcccttgtatatgctcagtta
cttacaggccgtaaatatcaagtaaatcaaaatggtgaagttcgtctagaaaaacaatgg
tcaaaacaagttcttccttttgtttatcaaactcttgtaaaggatatccgagcttttgac
tctcgtttctctagtatcaaaacgttggatgatttgtttcctataagaagtacggtcttt
atgctaggaactccttactatggctgcactggggaagtccaggactcgggtgatgtgatt
gcagaaggtaggattcgagtggttttcagcatcccgtgtgagcccaaccttgaggctcta
atacagaaccagcacaaatattctataaagtacaacccaggatatgtattggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aaaaaaaatgaagaggtgcctggctataccaagaaagttgggagcgagtggatgtattca
tctgcagcagagcaacttctcgctgagtacctagagagagctccagaactatttagttac
atagctaaaaatagccaagaggacgtgttctacgaggatgatatttggcctggagaagaa
gagaatggtgctgagaaagttcaagagattactacctggctaaaaggacatcctgtcagc
actttgtctcgttcttcttgtgatttgcaaattctggatgcagccattgttgagaaaatt
gaggaggaagttgaaaaatgcaagcaaaggaagagtaacaagaaagtgcgagtgacagtg
aagccccatttgttatacagacctttagaacagcagcatggagtcattcctgatcgagat
gcagaatttcgtctctttgaccgtgtggtaaacgtgagagagaatttttcagttcccgtt
ggccttcgtggcaccatcataggaattaaaggggctaatagagaagctgatatactgttt
gaagtattatttgatgaagaattttatggaggcctaacaataaggtgctcacctggtaga
ggttaccggctgccaacaagtgccttggtgaacctttctcatgggaaccgttctgaaact
ggaaaccagaagttgacagctattgtgaaaccacagccagctgtgaatcagtgtagctca
aattcatctatttcatccgggcatttgggaggcctcaaccattctcctcaatcacttttt
gttcctactcaagtacctgccaaagacgatgatgaattttctaatatttggcagtcctta
caaggatctggaaaaattcagcacttccagccagttcttcaagagaagggtacagttcta
cctcaagaaataagtcaagtaactcagcagcataaatctggcttcagtgacagcaatgtt
aaatatcagcaaagaaaacatgaccctcaccgaaaatttaaagaagaatgtaggagtcct
aaagctgaatgtcgctcacaaaaaatgtccagtaaacagacctttggaggttctgctaaa
tgtaataatatcaagctgttgaagagaaatgaaagtccaggagtcacagaaacccaaaag
cctagttccggaatggagaactttttagcatctttgaatatctctaaagaaaatgaagtg
cagtcatctcatcacggagagcctcccagtgaagagcatttgtcaccacagtcctttgcc
atgaagggaacacggatgctcaaagaaattttgaaaattgatggctcagatagcatggac
cgtacaaatgagctgaaacagtttggcagtgaagctgctagttcctctagtagaaaagat
gaatatggactgtcttcccagactaaacaaaataagaaattagcaccctacacacacaag
cctcccagcgctaacgagtaccagagtgttccgtctgtggacggcgtgtgctggtctggc
cagatccctcctgtatccactccagtaactgaactttctcgaatctgttcccttgttgga
atgccacaaccagacttctcctttctgagaacacctcagacaatgacagtttgccaagta
aaattatcgaacggcttgctagtccttgggccacagtgcccctctgaaaatgaagccaag
gagaaagctgcactttttgcattacaacagctgggctccctaggagtgaattttcctttt
cctccaccaatatttccaaattatcctcctgctgttccacctggaaccattcctccagtt
tatccccagccgactggctgggatcactatggaagcaacttagcatttggggcagcagct
gccatgatgcctccatcctcgcatcttcttggctcggtgccgtggcgaccaccggtgccg
gctcccgggaggcccttccaccccacttcctactcggggaccgtgcctggggccggaggc
ctgccaggcagcacgcacaaccagttcatacctctgcaggtcactaaaaaaagagtagca
aacaaaaagacctttgagaataaggaggcccagagttctcaagctgcctcacttgcgcct
agcaagccaggttcctctgaggtgaccaaagtggttccacaggaaagctcctcggcctcg
ctgcagtcctcccaggctgcacagcccgtgtctccgcaggcggaagctgccaccccagca
cccagcagggctccccagaagtccgcacccagctcctctgcacgaagaaagtcacggaaa
ctggctgtcaattttggcatttctaaaccttctgaataa
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integrated database retrieval system
