Perognathus longimembris pacificus (Pacific pocket mouse): 125342675
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Entry
125342675 CDS
T08928
Symbol
Topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125342675 (Topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plop03032
]
125342675 (Topbp1)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125342675 (Topbp1)
DNA replication proteins [BR:
plop03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
125342675 (Topbp1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125342675 (Topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
125342675
NCBI-ProteinID:
XP_048190944
LinkDB
All DBs
Position
26:5469498..5495556
Genome browser
AA seq
1511 aa
AA seq
DB search
MSRNGQEPFFVKFLKSSANSECFFKALESIKEFQSEEYLQIITEEEAIKMKENDRSLYIC
DPFSGPVFDHLKKLGCRIVGPQVVLFCMRHQQCVPRAEYPVYNMVLSDVTVSCTSLEKDK
REEVHKYVQMMGGQVYRDLNISVTHLIAGEVGSKKYLVAANLKKPILLSSWIRTLWEKSQ
ENKIARHTEVNLEDFRCPIFLGCVVCVTGLGGADRKEIQQLTVKHGGQYMGQLKMNECTH
LLVKEPKGQKYECARKWNVHCVTLQWFFDSVEKGFCQDETMYKIEPVLADRSGPNTSTPT
GPVSTSQIQALSNVSHISHISGSYINESICSSALSSKLDSTAENLDNLDISAFQAPEDLL
DGCRIYVCGFSGRKLDKLRKLVNSGGGIRFNQLNEDVTHVILGDHDDELKQFWSRSSHRP
HVVGASWLLECFSKGCLLPEEPHVHAHYQPAVEIAVANQPASKAAPPTKSGSVSAPHAAP
LEAPGPADEDLLSQYASNDSTIVLAKEPGASACAAGPCTGPVPGDPLSDSTHISLARSPC
LPDPPTSAEGLFARKSFLILGFSDEIQCHIANIVREHAGKVAPPGSRAVADYAVVPLLGC
EVEATVGDVVTNTWLVTCIDYQTLVDPKTNPLFTPVLVMAGTTPLQNCVISFSQCVGAEK
DSLIFLANRLGASVQEYFVRKPNAKKGMLASTHLVLKDAAGSKYEASKKWALPAVTIAWL
LESARTGRRADESQFLIDSAPRGEQRLANGLTNGVHCPAPPGTVGETHRKPTVSPLDMNR
FQSKAFQAVVQQHAGQVPACSPGGQLLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALEA
LETPGGPSQHKRKLSTPLSEVIVRSLKLALANSSRNTDLSASPQLKEAQAGKEEAAKPLV
NVVVCVSKKLGKKQSELNGLAASLGADYRWSFDETVTHFIYQGRSHDTNREYKAVRERGV
HVVSEHWLLECAQEGKRLPESLYPHTYNPKMSLDISAPQDSRPCNGRVPSAPSAAQQDEP
DRSPVEESDGGTAATTDKEPAPAGEHADLKGVLTQTLEMRENFQKQLQEIMSATSLAKPQ
VHRASLSLSGCQSASSTPDTMRCMRRSRSRVLEALRQSRQSEPDVNTEPSQSEQIIWDDP
TAREERARLASSLRWPGCPTPHASSVDKLELVEQEPGHEADVTEPAVSDPGRTSVIQAHK
AVISDEVEFPTTGKCEAHLIPTPEAPSIAFPLANPPVAPHPKEKMFTVEETDGDPRKQYI
FQLSSLNPQERIDYYHLIEELGGSVIETQCFDPSCTHIIVGHPLRNEKFLASMAAGKWVL
HRSFMEACRTAGHFVQEEDYEWGSSGILDAVGSVTEQQRRLARAAVRWRKAIQDRQRAGG
TEGAFSGWKVILHVEHSREAGFKRLLQSGGAKVLCGHAASLFKEATHLFSDLHKRKAEGS
GVDVAEAAAQDVRCLRTEYIADYLMQESPPRIEHYRLPEAASHLQNRPGAGTSEKRKAPD
EVEKNKPKRPR
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atgtctagaaatggccaagaaccgttttttgtaaagtttttaaagtcttcagccaattct
gaatgtttttttaaagctctggagtcaataaaggaattccaatcagaagaatatcttcag
attattacagaagaagaggcaataaagatgaaggagaatgacaggtcactttatatctgt
gacccttttagtggccctgtttttgatcatcttaaaaagcttggctgtagaatcgttggc
cctcaggtagtcctgttttgtatgcgccaccagcagtgcgtcccaagagctgaatatcct
gtctacaacatggttttgtctgacgtaactgtatcttgtacaagcctggagaaagacaag
agggaagaagttcataaatacgtgcagatgatgggcggacaagtgtacagagacctcaac
atatcagtaactcacctcattgctggagaagtgggaagcaaaaagtacttagttgctgcc
aacctaaagaaacctatattgctttcttcttggataagaaccctgtgggagaagtcacag
gagaacaagatagctaggcatactgaggtcaacctagaggacttccggtgtcctattttc
cttggttgcgtcgtctgtgtgacgggactgggtggcgccgacaggaaggagatccagcag
ctcaccgtgaagcatggcggccagtacatggggcagctgaaaatgaacgaatgcacacac
ctcctagtcaaagaaccgaaaggacagaagtatgagtgcgctaggaagtggaatgtgcac
tgtgtgaccctgcagtggttttttgacagcgtggagaaaggcttttgtcaggatgagact
atgtacaagatagagcctgtactggcagacaggagcgggcccaacacctccactcccacc
ggccccgtcagcacgtcccagattcaagctctttccaatgtcagccatatttcccacata
agcggaagttacatcaatgagtcgatatgcagttccgccctcagcagcaagttggactct
acggcggagaacctagacaacctggatatcagcgccttccaggcccccgaagatctgttg
gatggctgccggatctacgtttgtggttttagtggccgaaagctcgacaaactgagaaaa
ctggtgaacagtggaggcggcatccgctttaatcagcttaacgaagatgtaactcacgtc
atcctgggagaccacgatgacgagctgaagcagttttggagcagatcatctcacaggcct
cacgtcgtgggagccagctggctgctggagtgcttcagcaaaggctgtctgcttcccgag
gagccgcacgtgcacgcgcactaccagcctgcagtcgagatcgcggtggcaaaccagcct
gccagcaaagcagctcctcccaccaagagcggcagcgtctctgcgccccacgccgccccg
ctggaggcgcccgggccggcggacgaggacctgctgtcccagtacgcaagcaatgactcc
accatagttctggcgaaggagcccggagcgtcggcgtgtgcggccgggccctgtacgggc
cccgttcccggggatcccctgagtgactccactcacatctccctggcccgcagcccctgc
cttcccgacccccccacgagcgccgagggcttgttcgcacggaagagcttcctgattctg
ggcttcagcgacgagatccagtgtcacatcgcaaacatcgtgagagagcacgccgggaag
gtggctcccccggggagcagggccgtggccgactacgccgtcgtcccgctcctgggctgc
gaagtggaggccaccgtgggagacgtggtcaccaacacgtggctggtcacctgtatagac
tatcagaccttagttgatcccaagaccaatccactcttcacgccggttctggtgatggcg
ggcacgactcctttgcagaactgtgtcatttcattcagccagtgtgttggtgcagagaaa
gattctttgatattcttagcgaatcgccttggagcgagcgtccaggaatacttcgttcgc
aaacccaatgcgaagaaaggcatgctggccagcacgcacctcgtgctcaaggacgcggcg
ggctccaagtacgaggcttccaagaagtgggctttgccggcggtcaccatcgcttggctg
ctggagtcggcgaggacggggcggagagcggacgaaagccagttcctcatcgacagtgcg
cccagaggagagcaaagactggcaaatggactaacaaacggggtgcattgtccggcaccg
ccgggcacggtgggggagacccacagaaaacccacggtgtcgcccttggacatgaaccgc
ttccagagcaaggctttccaagccgtggtgcagcagcacgccggccaggttccggcctgc
tcgccggggggacagctgctgcagaaggagccgtccctccacctggacacgccctccaag
ttcctctccaaggacaagctcttcaagccttcctttgatgtgaaggacgcactggaagcc
ttggaaaccccaggaggccctagccagcacaaaaggaaactgagtaccccactgtccgag
gtcattgtcaggagcttgaaacttgctttggcaaatagctctcgaaacactgacctttct
gccagccctcaactgaaggaggcccaagcagggaaggaagaggctgcgaagccgcttgtc
aatgttgtggtctgtgtcagcaagaagctggggaagaagcagagcgagctcaacgggctc
gccgcctctcttggagcggattacaggtggagtttcgacgagactgtgactcacttcatc
taccaaggccggtcacacgacacgaatcgcgagtacaaggctgtgcgggagcggggcgtg
cacgtggtctcggagcactggctgctggagtgtgcccaagagggcaagcggctcccagag
tcgctgtacccacacacgtacaaccccaagatgagcctggacatcagcgcccctcaagac
agccggccctgcaatggccgcgtgccctcagccccgtctgcagcccagcaggatgagcca
gatcgctcccccgtggaagaaagcgacgggggcaccgcagccaccactgataaagagccg
gcccccgcgggcgagcacgcggatctgaaaggagttctgacgcagaccctggagatgcgc
gagaacttccagaagcagctgcaggagatcatgtctgcaacctccttagcgaagccgcag
gtgcacagggcctccctgtcgctaagcggctgccagagcgccagctccacccccgacacc
atgcgctgcatgcgccggagccgcagccgcgtcctggaggcgctgaggcagtctcgccag
agcgagcccgacgtgaacacggagccctcccagagcgagcagatcatctgggacgacccc
acggcccgggaggagcgcgccaggctggccagcagcctgcggtggcccggctgccccacg
ccgcacgccagcagcgtggacaagttggagttggtcgagcaggagcctgggcacgaggca
gacgtcactgagccggctgtctccgaccctggacgcacctctgtgatccaagcgcacaaa
gctgtgatctctgacgaagtagagtttccaaccacaggcaaatgcgaggctcatctgatc
ccaacgcccgaggcccccagcatcgccttccccctggccaaccctcctgtggctccacac
ccgaaagaaaagatgttcacagtggaggagacagatggagaccccaggaagcagtacata
ttccagctgtcctctctgaacccccaagagcgcattgactactatcatctcatcgaagag
ctaggcgggtcggtgatcgagacgcagtgcttcgaccccagctgcacgcacatcatcgtg
gggcacccgctgcgcaacgagaagttcctggcctccatggccgccggcaagtgggttctc
catcgctccttcatggaagcctgcaggaccgcggggcactttgtgcaggaggaggactac
gagtgggggagcagcggcatcctcgacgccgtgggcagcgtcacggagcagcagcggagg
ctggcccgcgcggccgtgcgctggaggaaggccatccaggacaggcagcgggcgggcggc
accgagggcgcgttcagcgggtggaaggtcatcctgcacgtggagcactcccgggaagcg
ggcttcaaacgcctgctccagtccgggggagcgaaggtgctgtgcggccacgcggcttcc
ttatttaaagaggccacgcatctcttctctgacttgcacaagcggaaggctgagggctcg
ggcgtggacgtggccgaggccgccgcccaggacgtgcgctgcttgcggaccgagtacatc
gccgactacctcatgcaggaatcccctcctcgtatagaacattaccgcctgcccgaagcc
gcctcgcatcttcagaatagacctggagccggaacatcagagaagagaaaagctccagat
gaagtagagaaaaacaagcctaaacggcccagatag
DBGET
integrated database retrieval system
