Perognathus longimembris pacificus (Pacific pocket mouse): 125343330
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Entry
125343330 CDS
T08928
Symbol
Hdac6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04613
Neutrophil extracellular trap formation
plop05014
Amyotrophic lateral sclerosis
plop05034
Alcoholism
plop05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
125343330 (Hdac6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
125343330 (Hdac6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125343330 (Hdac6)
09165 Substance dependence
05034 Alcoholism
125343330 (Hdac6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
plop01009
]
125343330 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125343330 (Hdac6)
04131 Membrane trafficking [BR:
plop04131
]
125343330 (Hdac6)
03036 Chromosome and associated proteins [BR:
plop03036
]
125343330 (Hdac6)
Enzymes [BR:
plop01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
125343330 (Hdac6)
Protein phosphatases and associated proteins [BR:
plop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125343330 (Hdac6)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125343330 (Hdac6)
Membrane trafficking [BR:
plop04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125343330 (Hdac6)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
125343330 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
125343330
NCBI-ProteinID:
XP_048191630
LinkDB
All DBs
Position
X:complement(77766550..77790425)
Genome browser
AA seq
1544 aa
AA seq
DB search
MTSTCQDSTASRQRKGRQNPQSPYHDVNAITKRTVKKGAVPRCTPNLSEIKKKGKMKKLS
QPVEEDLVMGLQGLDLNPEVKVMVGTGLVFDEQXNDFHCLWDDSYPENPERLHAIKEQLI
QEXLLDRCICFPARVAEKEELMLVHSPEYIDLMETTQYMNEGELRILASTYDSVYLHPNS
FICACLASGSILRLVDAVLGAEXRNGMAIIRPPGHHAQHDLMGGYCMFNHVALAARYAQK
STTLRGQVLIVDWDVHHGQGTQFMFDQDPSVLYFSIHRYEQGRFWPHLQASNWSAIGYGQ
GQGYNINIPWNQVGMRDADYIAAFLHVLLPVASEFQPQLVLVAAGYDALQGDPKGEMAAT
PAGFAQLTHLLMGMAGGKLILSLEGGYNLQSLARGVSASLHTLLGDPCPMLEFPGAPCRS
AQASVSCTLEALEPFWEVLVNTGDSTEEDNEARDNGNERQEEGEGLLGATSLPVLTWPTV
QHRTGLVYDQRMMSHCNLWDNHHPETPQRILRIMCHLEELGLAARCLHLPVRAATDAELL
TCHSAEYVERLRATETMKSRELHREGANFDSIYICPSTFTCAQLATGAVCRLVEAVLSGE
VLNGIALVRPPGHHAEHDAACGFCFFNSVAVAARHAQAIRGNALRILIVDWDIHHGNGTQ
HIFENDPSVLYMSLHRYDRGTFFPVGDEGSSSHVGQAEGMGFTVNIAWNGPRIGDADYLA
AWHRLVLPIAYEFNPELVLVSAGFDAAQGDPLGGCQVSPECYAHLTHMLMGLANGHNILI
LEGGYNLTSISESMAACTHSLLGDPPPLLSMLRPPQPGALASIMETIQAHRRYWRSLRAP
QVEDKDSPCTSKPVTRKASHPTHLRLAKGVTMSEGKGVKASTRKISSAPSTKTPATAHTK
VKTARGATCTPNKAQRSTWKTKVTWDTSENTVGGAMVVQGAFENSAGGTKMEQVTSSENV
EEVMDPITFEETVGGGAMVDKVTYKKTEGNKVDHATSEETVGGNTVDEATSEETVGGDTV
DRATSEETVGGNMVDWAISHEVVGGDLVDQVTSEETMGGDMVDKVTSKEAMGGAKVDEVT
SKEAMGGAKVDEVTSKEAVGGAKVDEVTSKETMGGAKVDKVTSEETMGGAKVDQVTSEET
MGGAKVDEVTFEETMGGAKVDEVTWKETMGGAKVDEVTSEETMGGAKVDQVTFEETMGGA
KVDEVTWKETMGGAKVDEVTSEETMGGAKVDQVTFEETMGGAKVDEVTSKETMGGAKVDE
VTSKETVGGAKVDEVTSKETVGGAKVDEVTSKETVGGAKVDEVTSKETVGGAKVDETNSD
DAVGGAKLIQTPLDSDRDKQISLQQGTTSQLAPHQQIGGPRILEPGNAAQRALEDEDPED
EGLLGEAAGGEPINSSELVYGSGEAAAAAAAAAASTAAAAAIGVAADSDEDLFYAVTPMP
WCPHLGAVCPIPAAGLDINQPCDSCGTFQENWVCLSCYKVYCSRYINGHMINHYEASQHP
LVLSCVDLSSWCYHCQAYVHHQDVLHVKTVAYKNKFGEDMPIPN
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgacttccacctgccaggattccacagcctccaggcagcggaagggtaggcagaatccc
caatcgccttatcacgacgtgaacgccatcacgaagagaactgttaagaagggtgctgtg
ccccgctgcactcccaatctatcggagataaagaagaaaggaaagatgaagaagcttagc
caaccagttgaagaagacctagtcatggggctgcaagggctggatcttaaccctgaagtg
aaggtaatggttggtactggcttggtgtttgatgaacagnctaatgactttcattgcctc
tgggatgacagctaccctgaaaatcctgaaaggctccatgccatcaaggagcaacttatc
caggaangcctgctggaccgttgtatatgctttccggcccgggttgcagaaaaggaagag
ctcatgttggttcacagccccgaatacattgacctgatggagacaacccagtacatgaat
gaaggagaacttcgcatactagcaagcacctatgattccgtctatctacatccgaactcg
tttatttgtgcctgcctggcttcaggctccatccttaggctggtagatgccgtcctcggg
gctgagnatcggaacggcatggctatcatcaggcctccaggacaccatgcccagcatgat
ctgatgggtgggtattgcatgttcaaccatgttgctttagctgctcgttatgctcaaaag
agcaccacattaagaggtcaggtccttatcgtggactgggacgttcatcatggccaagga
acacagttcatgtttgaccaggatcccagtgttttgtacttctccatccaccgctatgag
cagggtcggttctggccccacctccaggcctctaactggtctgctataggttatggtcaa
ggccaaggctacaacatcaatataccatggaatcaggtggggatgcgggatgcggactac
attgctgcttttctccatgtcctgttacctgttgcttctgagtttcagccgcaactggtc
ctggtagctgctggatatgatgccctccaaggggaccccaagggagagatggctgccacc
cctgcaggctttgcccagttaacccatctgctcatgggtatggcaggaggcaaactgatt
ctgtctctggagggtggttacaaccttcagtctctggctaggggtgtcagtgcatcactc
catacgcttctgggagacccttgccctatgctagagttccctggtgcaccatgtcgaagt
gctcaggcttcggtctcctgcactctggaagcactggaaccattctgggaagtacttgtg
aacacaggtgatagtacagaggaggacaatgaggccagagacaacgggaatgagagacaa
gaggaaggggaaggactcttgggggccacttcactgccagtcctgacatggcccacagtg
cagcatcgtacaggattggtctatgaccaaagaatgatgagtcactgcaacctgtgggac
aaccaccatcctgagacaccccagcgcattttgcggatcatgtgccacctggaggaatta
ggcctggcagcacgctgcctccacctgccagtgcgggctgccactgatgccgaactcctt
acttgccacagtgccgagtacgtggagcgtctccgggccacagagacgatgaaaagccgg
gagctgcaccgcgagggggccaactttgactccatctacatctgccccagcacattcacc
tgtgctcagctagctacgggggctgtctgccgcctggtggaagctgtactgtcaggagag
gttttgaacggcattgctctggtgcgcccccctggacaccatgcggagcacgatgctgcc
tgtggcttctgtttttttaattctgtggctgtggctgctcgccatgcccaagccattagg
gggaatgccttaaggattctgattgtagattgggacatccatcatgggaatggaactcag
cacatttttgagaatgaccccagtgtgctttatatgtccctgcaccgctatgatcgtggc
acattcttccccgtgggggatgaggggtccagcagccacgtaggtcaggctgagggcatg
ggcttcactgtcaatatagcctggaatgggccccgtataggtgatgctgactacctggcg
gcatggcatcgacttgtgcttccaattgcatacgagtttaacccagaactggtgctggta
tccgctggttttgatgctgcacaaggtgacccactgggtggctgccaggtgtcaccagaa
tgttatgcccatctcactcacatgctgatgggcctggccaatggccacaatatccttatc
ctagagggtggctacaacctgacatccatctcagagtctatggctgcctgcacccattcc
ctccttggagatccaccacccttgttgtctatgcttcggccaccacaaccaggggccctg
gcctcaattatggagaccatccaagcccatcgcagatactggcgcagtttgagggccccg
caggtagaagacaaggattcaccctgcacgtccaaacccgttaccagaaaggcatcccat
ccaacccatcttaggttggctaagggggtgaccatgtcagaaggaaagggtgtaaaagca
agcacaaggaaaattagctcagcaccatctacaaaaacacctgctacagctcacaccaaa
gtgaagacagccagaggggccacatgtaccccaaacaaggctcagagatctacttggaaa
acaaaagtgacctgggacacctctgagaacacagtgggaggagccatggtggtccagggg
gccttcgagaatagtgctggaggtacgaagatggagcaggtgacctccagtgaaaatgtg
gaagaagtcatggacccgatcacctttgaggagactgttggaggaggagccatggtggac
aaggtcacctataagaagactgaaggaaacaaggtagaccatgccacctctgaggagact
gtgggaggaaacacggtggatgaggctacttctgaggagactgtgggaggagacacggtg
gaccgggccacctcggaggagactgtgggaggaaacatggtggactgggccatctcccat
gaggttgtgggaggggacctggtagaccaggtcacctctgaggagactatgggaggagac
atggtggacaaggtcacctccaaggaggccatgggaggtgccaaggtggacgaggtcacc
tccaaggaggccatgggaggtgccaaggtggatgaggtcacctccaaggaggctgtggga
ggtgccaaagtggacgaggtcacctccaaggagaccatgggaggtgccaaagtggacaag
gtcacctccgaggagaccatgggaggtgccaaggtggaccaggtcacctccgaggagacc
atgggaggtgccaaggtggacgaggtcaccttcgaggagaccatgggaggtgccaaggtg
gacgaggtcacctggaaggagaccatgggaggtgccaaggtggacgaggtcacctccgag
gagaccatgggaggtgccaaggtggaccaggtcaccttcgaggagaccatgggaggtgcc
aaggtggacgaggtcacctggaaggagaccatgggaggtgccaaggtggacgaggtcacc
tccgaggagaccatgggaggtgccaaggtggaccaggtcaccttcgaggagaccatggga
ggtgccaaggtggacgaggtcacctccaaggagaccatgggaggtgccaaggtggacgag
gtcacctccaaggaaaccgtgggaggtgccaaggtggacgaggtcacctccaaggagacc
gtgggaggtgccaaggtggacgaggtcacctccaaggagaccgtgggaggagccaaggtg
gacgaggtcacctccaaggagaccgtgggaggagccaaggtggacgagaccaactcagat
gatgctgtgggaggagccaagctgatccaaactcctctagactcagacagagataagcag
atctcacttcagcagggaaccacatcccagctagccccccatcagcagattggaggtccc
agaattttagaaccaggcaatgcagctcagagagccctggaagatgaagacccggaagat
gaaggcctactaggagaagcagctggaggtgagcctattaatagctctgagctggtatat
ggatctggggaagctgctgctgctgctgctgctgctgctgcttctactgctgctgctgct
gctattggtgttgctgctgacagtgatgaggacttattttatgctgtaacaccaatgcct
tggtgcccccatttgggggcagtgtgccccatacctgcagcgggactggacataaaccaa
ccttgtgatagctgtggaactttccaggagaactgggtgtgtcttagttgctataaggta
tactgcagtcgttatataaatggccacatgatcaatcattatgaagcttctcaacaccca
ttagttctcagctgtgttgacctctcttcctggtgttaccactgccaggcctatgtccac
caccaggatgtcctccatgtgaagactgtggcctacaagaacaaatttggagaggacatg
ccgatacccaactaa
DBGET
integrated database retrieval system
