Perognathus longimembris pacificus (Pacific pocket mouse): 125343360
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Entry
125343360 CDS
T08928
Symbol
Mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125343360 (Mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125343360 (Mid1)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125343360 (Mid1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125343360 (Mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
125343360
NCBI-ProteinID:
XP_048191679
LinkDB
All DBs
Position
X:108628203..108934916
Genome browser
AA seq
667 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESISAFQCPTCR
HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERPFDATTMSSAEKVLCQ
FCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHED
EKVNMYCVADDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRNTELETL
LAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKIKEGKVMRLRKLAQQIA
NCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFD
TFALDFSREKKLLECLDYLTAPNPPTIREELCTASYDTITVHWTSDDEFSVVSYELQYTI
FTGQANVISLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFMVKAINQAGSRSSEPGKLK
TNSQPFKLDPKSAHRKLKVSHDNLTVERDESSSKKSHTPERFTSQGSYGVAGNVFIDSGR
HYWEVVISGSTWYAIGLAYKSAPKHEWIGKNSASWALCRCNNNWVVRHNSKEIPIEPAPH
LRRVGLLLDYDSGSIAFYDALNSIHLYTFDVAFAQPVCPTFTVWNKCLTIITGLPIPDHL
DCTEQLP
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgctggagtcggagctgacctgccctatttgtctggagctctttgaggaccct
ctgctgctgccgtgtgcacacagcctctgcttcaactgcgcccaccgcatcctggtttca
cactgtgccaccaacgagcccgtggagtccatcagcgctttccagtgccccacctgccgc
catgtcatcacgctcagccagcgaggtctagacggactcaagcgcaacgtcaccctgcag
aacatcatcgacaggttccagaaagcctccgtgagcggcccgaattcccctagcgagacc
cgccgggagcggcccttcgacgctaccaccatgtcctctgcggagaaggtcctctgccag
ttctgtgaccaggaccctgctcaggacgctgtgaagacctgtgtcacctgcgaagtgtcc
tactgtgatgagtgcctgaaagccactcacccgaacaagaagcccttcacgggccatcgt
ctgattgagccaatcccggactcgcacatccgggggctgatgtgcctggagcacgaggat
gagaaggtgaatatgtactgtgtggccgatgaccagttaatctgtgccttgtgtaaactg
gttgggcggcaccgcgatcatcaggtggcagctttgagtgagcgctatgacaaattgaag
caaaacttagagagcaacctcaccaaccttatcaagaggaacacagaactggagaccctt
ttggctaaactcattcaaacctgtcaacatgttgaagttaatgcatcacgtcaagaagcc
aaattgacagaagagtgtgatcttctcattgagatcattcagcaaagacggcaaattatt
ggaaccaagatcaaagaaggaaaggtgatgaggcttcgcaaactggctcagcagattgca
aactgcaagcagtgcattgagcgctccgcatccctcatctcccaagcagaacactctctg
aaggagaatgatcatgcccgcttcctgcagactgcgaagaatatcactgagagagtctcc
atggcaactgcatcttctcaggtccttattcctgaaatcaacctcaatgacacatttgac
acctttgccttagatttttcccgagagaagaaattgctagaatgtctggattatcttaca
gctcctaaccctcccacaattagagaagagctctgcacagcttcatatgacaccatcact
gtccactggacatccgatgatgaattcagtgtggtctcctatgagctccagtacaccata
ttcaccggacaagccaatgtcattagtctgtgtaactcggctgatagctggatgatcgtg
cccaatatcaagcagaaccactacactgtacacggtctgcagagtggcaccaagtacatc
ttcatggtcaaggccatcaaccaggcaggcagccgcagcagtgagcctggcaagttgaag
acaaacagccaaccatttaaactggatcctaaatctgctcatcgcaagctgaaggtgtcc
catgataacctgacagtagaacgtgatgagtcatcatctaaaaagagtcacacacccgaa
cgcttcaccagccaggggagctatggagtagccggaaatgtgttcattgatagtggccgg
cattactgggaagtggtcataagtggaagtacatggtatgccattggccttgcttacaaa
tcagcccccaaacatgaatggattgggaaaaactctgcttcctgggccctctgccgctgc
aacaataactgggtggtgagacacaacagcaaggagatccccattgagccagcccctcac
ctcaggcgcgtcggccttctgctggactatgacagcggctccatcgccttttatgatgct
ttgaactccatccacctctacacctttgatgtggcatttgcgcagcctgtgtgtcccacc
ttcactgtgtggaacaagtgtctgacgatcataactggtcttcctatcccagaccacttg
gattgtacagagcagctgccttga
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