Perognathus longimembris pacificus (Pacific pocket mouse): 125344090
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Entry
125344090 CDS
T08928
Symbol
Smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04110
Cell cycle
plop04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
125344090 (Smc1a)
04114 Oocyte meiosis
125344090 (Smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125344090 (Smc1a)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
125344090 (Smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
125344090 (Smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_15
AAA_21
AAA_29
ABC_tran
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
125344090
NCBI-ProteinID:
XP_048192650
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All DBs
Position
28:complement(71510740..71563900)
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AA seq
1233 aa
AA seq
DB search
MGFLKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKT
LRDLIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNK
ELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEESQS
QGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQV
MEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRY
EPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKERLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLALNLQEKSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEF
CREIGVRNIREFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ
TVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGG
ANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGGSQGE
DSVSGSQRTSNIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRI
AAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATN
IDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALAL
LFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESL
IGVYPEQGDCVISKVLTFDLTKYPDANPNPNEQ
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggggttcctgaaactaattgagatcgagaactttaaatcgtacaagggtcgacagatt
atcgggccatttcagaggttcaccgccatcattggacccaatggctctggtaagtcaaat
ctcatggatgccatcagctttgtactaggagaaaaaaccagcaacctgcgagtaaagacc
ttgcgggacctgattcatggtgctcctgtgggcaagccagctgccaatagagcctttgtc
agcatggtctattctgaggaaggtgctgaggatcgcacctttgcccgagtcattgtagga
ggctcttctgaatacaagatcaacaacaaagtggtccagctacatgaatacagtgaagag
ttagagaagttgggcattctcatcaaagctcgaaacttcctcgtcttccagggtgctgtt
gagtctattgccatgaagaaccccaaggagaggacagctctatttgaagagattagtcgc
tctggtgagctggcacaggaatatgataagcgaaagaaggaaatggtgaaagctgaagaa
gatacacagtttaattaccatcgtaagaaaaatattgcagctgaacgcaaggaggccaaa
caggagaaagaagaggcagaccgttaccagcgcctgaaggatgaggtggtacgagctcaa
gtacagttgcagctcttcaaactttaccataatgaagtggaaattgagaagctcaacaaa
gaactggcctctaagaacaaggagattgagaaggacaagaaacgtatggacaaggtagag
gatgagctgaaggagaagaagaaagagctgggcaaaatgatgcgggagcagcagcagatt
gagaaggagatcaaggagaaggattcagagctgaatcagaagcgacctcagtacatcaaa
gctaaggagaatacctcccacaagattaaaaagctagaagcagcaaaaaaatctctgcag
aatgctcagaagcactataagaagcgtaaaggtgatatggatgagctggagaaggagatg
ttatctgtggagaaggcacggcaggagtttgaagaacggatggaagaggagagtcagagt
caaggcagagacttgactctggaagagaatcaggtaaagaaataccatcggttgaaagaa
gaagccagcaagagagcagctactttggcccaagagctggagaagttcaatagagaccag
aaagctgaccaggaccgtctggatctggaagagcggaagaaagtagaaacagaggccaag
atcaagcaaaagcttcgagagattgaagagaatcagaaacggattgagaagctggaggaa
tacattaccaccagcaaacaatccctagaggagcagaagaaattagagggagaactgaca
gaggaagtggagatggccaaacggcgtattgacgagatcaataaggaactaaaccaggtg
atggagcagttgggagatgcccgcattgaccgccaggagagcagtcgccagcagcgaaag
gcagagataatggaaagcatcaagcgcctttaccctggctctgtgtatggtcgcctcatt
gacctctgccagcccacacaaaagaaataccagattgctgtgacaaaggttttgggcaag
aacatggatgccattattgtagactcagagaagacaggccgagactgtattcagtatatc
aaggagcagcgtggggagcctgagaccttcttgcctcttgactacctggaggtgaaacct
acagatgagaaactacgggagctgaagggagccaagctagtgattgatgtgattcgctat
gagccacctcatatcaaaaaagccttgcagtatgcttgtggcaatgcccttgtctgtgac
aatgtggaggatgcccgtcgcattgcctttggaggccaccaacgtcacaagacggtggca
ctggatgggaccctgttccagaagtcaggagtcatctctggtggggccagtgacctgaag
gccaaggcacggcgctgggatgagaaagcagtggacaagttgaaagagaagaaggagcgt
ttgacagaagagctgaaagaacagatgaaagcaaagaggaaagaggcagagctgcgtcag
gtgcagtctcaggcccatggactgcagatgcgactcaagtactcacagagtgacctggaa
cagactaagacaagacatttggctctgaatctccaggaaaagtccaagctggagagtgag
ctggctaactttgggcctcgcattaatgatatcaagagaatcatccaaagccgagagagg
gaaatgaaggacttgaaggagaagatgaaccaggtagaagatgaggtgtttgaagagttt
tgtcgggagattggtgtgcgcaacatccgagagtttgaggaagagaaggtaaagcggcag
aatgaaattgccaagaagcgtttggagtttgaaaatcagaagactcgcttgggtatccag
ttggattttgagaaaaaccaactgaaagaggaccaggataaagtgcacatgtgggaacag
acagtgaagaaggatgaaaatgagatagaaaaactcaagaaggaggaacaaagacatatg
aagatcatagatgagactatggcccagctacaagatctgaagaatcagcatctggccaag
aaatctgaagtgaatgacaagaaccatgagatggaggagattcgtaagaaactgggtggt
gccaacaaggaaatgacccatttacagaaggaggtgacagccatcgagactaagctggaa
cagaagcgcagtgaccgtcacaacttgctacaggcctgcaagatgcaggacatcaagttg
ccactgtcaaagggcaccatggatgatattagtcaggaagagggtggctcccagggggag
gattcagtaagtggttcccagagaacttctaatatctatgcacgagaggccctcattgag
attgactatggcgacctgtgtgaggatctcaaggatgcacaggctgaggaagagatcaag
caagagatgaacacattacaacagaagctaaatgaacagcagagtgtacttcagcggatt
gctgcccccaacatgaaggccatggaaaagctggaaagcgttcgagacaagttccaggag
acttcagatgagtttgaagcagcacggaagcgagcaaagaaggccaagcaggcatttgaa
caaattaagaaggagcgctttgaccgtttcaatgcttgttttgaatctgtggctaccaac
attgatgagatctataaggctctgtcccgaaatagcagtgcccaggcattcctgggccct
gagaaccctgaagagccctacttggatggcatcaactacaattgtgtggctcctggcaaa
cgcttccggcctatggacaacttgtcaggtggagagaagacagtggcagctttggccttg
ctgtttgccatccatagctacaagccagcccccttctttgtcctggatgagattgatgct
gctttggataacactaacatcggcaaggtggcaaattacatcaaggagcagtcaacttgc
aacttccaggccattgtcatctctctgaaggaagaattctacaccaaggctgaaagcctc
attggagtctatcctgagcaaggggactgtgtgatcagcaaagtcctgaccttcgacctc
accaagtacccagatgccaaccccaaccccaatgagcaataa
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