Perognathus longimembris pacificus (Pacific pocket mouse): 125344260
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Entry
125344260 CDS
T08928
Symbol
Thoc2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013
Nucleocytoplasmic transport
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125344260 (Thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
125344260 (Thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125344260 (Thoc2)
03041 Spliceosome [BR:
plop03041
]
125344260 (Thoc2)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125344260 (Thoc2)
Spliceosome [BR:
plop03041
]
Complex C
Other components
EJC/TREX
125344260 (Thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125344260 (Thoc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
125344260
NCBI-ProteinID:
XP_048192864
LinkDB
All DBs
Position
X:21846660..21950727
Genome browser
AA seq
1623 aa
AA seq
DB search
MADATVVLPAEWIKNWEKTGRCEFLHLCRLLSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASNVLTDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPDTLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADSCIMDEHK
REIVEAKQIVRKLNMVVLSSEKMDEREKEKEKDDDKVEKPPDNQKLGLLEALLMIGDWQH
AQNIMDQLPPYYAASHKQIALAICKLIHITVEPLYRRVGVPKGAKGSPVDALQNKRAPKQ
AESYEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSEGTKQEDKDKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVR
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGN
KQQHKVHKYISSCEMVMAPVHEAVVSIHVAKVWDDISPQFYATFWSLTMYDLAVPHSSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHEQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSKKSYMIPENEFHHKDPPPRNAVASV
QNGPSGGPSSSSLGSASKSDESSTEETDKSRERSQCGVKAINKASSATPKGNSSNGNSGS
NSSKAVKETDKEKGKEKEKEKKEKTPATTPEARVLGKDGKEKPKEERPNKDEKARETKER
TPKSDKDKEKFKKEEKSKDEKFKTTVPSTESKSTQERDREKEPSRERDVTKEMKSKENVK
GGEKTPISGSLKSPVPRSDNAEPEREQKRRKIDTHPSPSHSSTVKDSLIELKESSSKLYI
NHTPPPISKSKEREMDKKELDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDLTKRR
KEENGTMGVSKHKSESPCESPYPNEKDKEKNKSKSSGKEKSGDSFKSEKMDKLSSGGKKV
NYEHKQSIFSLKNIDSSRKSKKNSTHYVIYRIVTPLYNTIITIKLFLKDDSLKALHIFFV
LVK
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcaaccgtggtgcttcccgcagagtggataaagaactgggagaaaacaggg
agatgcgaattcttgcatttatgccggcttctcagtgaaaataaaagccatgacagttct
acttacagagattttcagcaagccttgtatgagttatcatatcatgtcattaaaggaaat
ttaaagcatgaacaagcatctaatgttcttactgatattagtgaatttcgtgaagatatg
ccctccattcttgctgatgtattctgtatattagatattgagacaaattgtttagaagaa
aaaagcaagagagactattttacacaattggtattagcatgtttgtatttagtttcagac
acagttctaaaggaacgcttggatccagatacattggaatcattggggcttatcaaacaa
tcacagcaattcaatcaaaagtcagttaaaatcaagacaaagctcttctataaacagcaa
aaatttaatttgttaagagaagagaatgaaggttatgccaagctgattgctgagttggga
caagatttatctggaaatattactagtgatttaatcttagaaaatatcaagtctttaatt
ggatgcttcaatctggatcccaatagagtactggatgtcattttagaagtatttgaatgc
aggccagaacacgatgacttctttatatctttattagaatcttacatgagtatgtgtgaa
ccgcaaacactgtgtcatattcttgggttcaaattcaagttttatcaggaaccaagtggt
gaaactccgtcatctttatacagagttgcagctgtacttctacaatttaatcttattgat
ttagatgatctttacgttcatcttcttccagctgatagttgcattatggatgaacataaa
cgagaaattgtggaagctaagcaaattgttagaaaacttaacatggttgtattgtcttct
gaaaaaatggatgagagagaaaaagaaaaggagaaagatgatgacaaagtagagaagcca
cctgacaaccaaaaacttggtctattggaagccttgttaatgattggtgattggcagcat
gcacagaacattatggatcagttgcctccatactatgcagcttcacataaacaaatagcc
ctcgctatttgcaagctcattcacataactgttgagcctctctatagaagagttggtgtt
cctaaaggtgctaaaggttcacctgttgatgctttgcaaaataagagagcgccaaaacaa
gcagagagctatgaagatttgaggagagatgtattcaatatgttctgttaccttggtcct
cacctttctcatgatcccattttgtttgcaaaagtggtgcgcataggcaagtcatttatg
aaggagtttcagtctgaaggaaccaagcaagaagataaagacaaaacggaagttatactt
agctgtttgctaagtattactgatcaggtactacttccatctctttctttgatggactgc
aatgcttgtatgtctgaggaactatggggaatgtttaaaacatttccctatcaacatagg
tatcgcctgtatggccagtggaagaacgaaacctataacggccatccacttttagtaaga
gttaaagctcaaacaatagacagagccaaatatatcatgaagcgtctgacaaaggaaaat
gtgaaaccttcaggaagacaaattgggaagttgagccacagcaatccaaccattttgttt
gattatatcttgtcacaaatacagaagtacgataacttaataacaccggtggttgattca
ttaaaatatctcacttcattgaattatgatgttttggcctattgtatcatagaagcttta
gctaatccagaaaaggagaggatgaaacatgatgacacaacgatttcaagctggcttcag
agtctggctagtttctgtggtgcagtttttcgtaaatatccaattgatcttgctggtctt
cttcaatatgtggccaatcaactaaaagcaggcaaaagttttgatctgcttatactgaaa
gaagtggtacaaaaaatggcaggaattgaaattacagaggaaatgacaatggagcaacta
gaggccatgactggtggggagcagctcaaagctgagggtggttattttggccagatcaga
aacactaaaaaatcatctcagagattaaaggatgccctattagatcatgatcttgctctt
cctctctgtttgcttatggctcagcagaggaatggagtaatatttcaggaaggtggagag
aaacatttgaaacttgttggaaaactgtatgaccagtgtcatgatactctggtacagttt
ggtgggtttttagcatcaaatctaagcacagaagattatataaagcgagtaccttcaatt
gatgtgctctgtaatgaatttcatacacctcatgatgcagcattttttctgtctaggcca
atgtatgctcaccatatttcgtcaaaatatgatgaacttaaaaaatcagaaaagggaaat
aaacaacagcataaagtacataagtacatttcatcatgtgagatggtgatggcacctgtc
catgaagcagtggtctccatacatgttgccaaagtctgggatgacatcagccctcagttc
tatgccacattctggtcattgacaatgtatgatcttgcggttccacattccagctatgaa
cgcgaagtcaataaacttaaagtccagatgaaagcaattgatgacaatcaggaaatgcct
ccaaataaaaagaaaaaagagaaggaacgttgtactgcccttcaagataagcttcttgaa
gaagaaaagaaacaaatggaacatgtgcagagagtgttacagagactgaaattggaaaaa
gacaattggcttttagcaaaatctaccaaaaatgagaccatcacaaaatttctacagctg
tgtatatttcctcgatgcattttttcagcaattgatgctgtttactgtgctcgttttgtt
gaattggtacatgaacagaaaactccaaatttttccacacttctttgctatgatcgagtt
ttctctgacataatttacacagttgccagctgtactgaaaatgaagctagtcgatatggg
agatttctttgttgtatgttagagactgtgaccaggtggcatagtgatcgagccacatat
gagaaggaatgtggaaactatccaggattccttactatattacgggcaactggatttgat
ggtggaaataaagctgatcaattagattatgaaaattttcgacatgtggttcataagtgg
cattacaaactaaccaaggcatcggtgcattgccttgaaacaggcgaatatactcacatc
aggaatatcttgattgtgctaacaaaaatacttccttggtatccaaaagttctgaatctg
ggtcaggctttggaaagaagagtacataaaatctgccaagaggaaaaagagaagaggcca
gatctatatgcattggcaatgggctactctgggcagttgaaaagtaaaaagtcatacatg
atacctgaaaatgagtttcatcacaaagacccccctccgaggaatgctgttgccagtgta
caaaatgggcctagtggtgggccttcttcatcatccctaggaagtgcatctaaatcggat
gaaagcagtactgaggagactgataaatcaagggagagatctcagtgtggtgtgaaagct
attaataaagcttctagtgccacaccaaaagggaattcaagcaatggaaatagtggctct
aacagcagcaaagctgttaaagaaactgacaaagaaaaagggaaagagaaagaaaaagaa
aaaaaagaaaagactccagctactactccagaggccagggtacttggtaaagacggtaaa
gaaaaaccaaaagaagagcggcccaataaagatgaaaaagcaagagagaccaaggaaaga
acacctaagtctgacaaagacaaagaaaaattcaagaaggaagaaaaatctaaagacgag
aaattcaaaacaactgtccccagcacagaatcgaagtctactcaagaaagggatcgagag
aaggagccatccagagaaagagatgtaacaaaggaaatgaaatcaaaggaaaatgttaaa
ggaggagaaaaaacaccaatttctgggtccttgaagtcacctgttccccgatcagataat
gcagagcctgaaagggaacagaaacgccgcaaaattgatacacatccttctccatcacat
tcctccacagtaaaggacagtctcatcgaactcaaggaatcttcatcaaagctctacatt
aatcatactcctccaccaatatccaagagtaaggagagagaaatggacaagaaagagttg
gacaagtcaagggaaagatccagagaaagagagaaaaaagatgaaaaggacaggaaagag
cggaaaagggatcactcaaacaatgaccgtgaagtaccaccggacttaaccaagaggcgg
aaagaggaaaatggcacaatgggggtttcaaaacacaaaagtgaaagtccctgtgagtct
ccttatccaaatgagaaagacaaggaaaaaaataaatcaaaatcttcaggcaaagaaaaa
agtggtgactcatttaaatctgagaagatggataaactatcctccggtggcaaaaaggta
aattatgagcacaaacagtctatcttttctttaaaaaacattgactcttctaggaaaagc
aagaagaattctacccactatgtaatttacagaattgtaacccccctgtacaacacaata
ataacaataaaactatttttaaaagacgactctttaaaagctttgcacatattttttgtc
ctagtcaagtag
DBGET
integrated database retrieval system
