Perognathus longimembris pacificus (Pacific pocket mouse): 125344677
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Entry
125344677 CDS
T08928
Name
(RefSeq) high mobility group protein B1-like
KO
K10802
high mobility group protein B1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03410
Base excision repair
plop04140
Autophagy - animal
plop04217
Necroptosis
plop04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125344677
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125344677
09143 Cell growth and death
04217 Necroptosis
125344677
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
125344677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125344677
03400 DNA repair and recombination proteins [BR:
plop03400
]
125344677
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125344677
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
125344677
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
125344677
MMR (mismatch excision repair)
Other MMR factors
125344677
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
125344677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
Nop14
PI3K_1B_p101
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
125344677
NCBI-ProteinID:
XP_048193056
LinkDB
All DBs
Position
2:complement(71460423..71472446)
Genome browser
AA seq
323 aa
AA seq
DB search
MGKGDPTKPRGKMSSYAFFVQTCQEEDKKKHPDASVNFSEFSKKCSERWKTISAKEKEKL
EDMANADKARYKREMKTYIPPKGETKKKFKDPNVPKRPPSAFFLFCSEYRPKSKGEQPGM
PIGEIANKPGEMWHNTAADDKQPYGKKGAKLKEKHEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEEEEDKEDEDEDDDDESSFLQNRVRVEGRHGICTFLGANSNFHSSA
GTQQSRETQLPQQESEEAAPAPGSPSKRAGILPSSSRVNSMQEAGVSEVPPDTKQLKAKP
CGPRMHEHQAVTLDLEEQSVEFK
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctacgaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccaggaggaggacaagaagaagcacccggatgcctccgtcaacttctcagag
ttttctaagaagtgctcagagaggtggaagactatatctgctaaagagaaagagaaactt
gaagacatggccaacgcggacaaggctcgttataaaagagaaatgaaaacctacataccc
cctaaaggggaaacaaaaaagaagttcaaggatcccaatgtgcccaagaggcctccttcg
gccttcttcttgttctgttctgagtatcgccctaaaagcaaaggggaacagcccggcatg
cctattggtgagattgcgaacaaaccgggagagatgtggcacaacactgctgcagatgac
aagcagccttatggaaagaagggtgctaagctgaaggaaaaacatgaaaaggatattgct
gcctaccgagctaaaggaaaacctgatgcagccaaaaagggggttgtgaaggctgaaaag
agcaagaaaaagaaggaagaggaggaagatgaagaggatgaggaagaagaggaagacaaa
gaggatgaggatgaagatgatgatgatgaatcatccttccttcagaacagggtcagagtt
gagggaagacatggcatctgcaccttcctgggtgccaactccaacttccacagcagcgca
ggcactcagcagagccgggaaactcagctgccccagcaggagagtgaggaggccgccccc
gcccctgggtcaccctccaagagagcaggcattctaccttcatcttccagagtaaattca
atgcaggaagctggagtatctgaggttcccccagacactaaacaactgaaagccaagcct
tgtgggcccagaatgcatgagcatcaggctgtaactctggatctcgaagaacaaagcgta
gaattcaagtag
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