Perognathus longimembris pacificus (Pacific pocket mouse): 125344879
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Entry
125344879 CDS
T08928
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125344879
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125344879
Spliceosome [BR:
plop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125344879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
Ank_4
AAA_29
PBP-Tp47_a
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
125344879
NCBI-ProteinID:
XP_048193140
LinkDB
All DBs
Position
Unknown
AA seq
1426 aa
AA seq
DB search
MSRPSSVSPRPPAPGAGGPASGGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQRE
MEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAVMTCNLTHNT
KHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGE
SEFDAFRQSLPVFEKQEEIVNIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRI
FCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSC
PVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTFK
PESQRQRTVPSVNEEYDVLDDGGDAVFSQLTEKDVNCLEPWLIKEMDSCLSDIWLHKDID
AFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSKASNGWMA
LDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEK
VDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLHS
NMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTML
KMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLL
APVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRDG
IPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPSKP
WSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKSSAD
TEFPDECTTAERVLTKSPSPALHPPQKYKDRGILHPKRSTEDRSDQCSVKSADSSTYPSP
CASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAF
WESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQCA
HHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKPTSD
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcccagcagcgtctccccgcggccgccggccccgggcgcgggcggcccggcg
tcggggggtcccgggggcggcggccgggccaagggactcaaggacattcgtatcgacgag
gaggtgaagatcgccgtgaacatcgccctggagcgcttccgatatggggaccagcgagaa
atggaatttccctcttctttgactagtactgaaagagcctttattcatcgattgagtcag
tctcttggtttggtctctaagagtaaagggaagggagcaaatagatacctaaccgtgaag
aagaaagatggatcagaaacagctcatgcagtgatgacctgtaatttgactcataacaca
aaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgaactgaa
cttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaatagagaaatg
agcaagacaagtgggcggctcaacaatggcatacctcaagttccagtaaaaagaggagaa
tcagaatttgatgcattcagacagtctttgccagtgtttgagaaacaagaagagattgtt
aacataattaaggaaaataaagtcgttttgattgtaggagaaactgggtcaggaaagacc
acacagattcctcagttcctcttagatgattgctttaaaaatggtatcccctgccgtata
ttttgtacgcagccgagacgattagcagccattgctgtggctgaaagagttgctgctgag
agaagggaaagaattggtcaaacaattggttatcagattcgattagaaagcagagtttct
ccaaagacactgctgacattttgcacaaatggagtgctgcttcgcacactgatggctggg
gatagcaccttgtcaacggtgactcatgtgattgtggatgaagtacatgaacgggatcga
tttagtgattttttacttacaaagttaagagatttgttacaaaaacacccgactttgaaa
ctgattctttctagtgctgccttggatgtaaatctctttataagatattttggaagttgt
ccagtgatatatatacagggaagaccatttgaggtcaaagaaatgtttctggaagatatt
ttaagaactactggatataccaacaaagaaatgttaaagtacaagaaagaaaaacagcga
gaagagaaacaacaaaccacactcacagaatggtactcagctcaagagaatactttcaaa
cctgagtctcagaggcagagaaccgttcccagcgtgaatgaagagtatgatgtcctggac
gatggtggtgatgccgtctttagtcagttgacagaaaaagatgtgaattgtcttgaacca
tggttaataaaggaaatggactcttgtctttccgacatatggctacataaagatattgat
gcctttgctcaggtcttccaccttattttaactgaaaatgttagtgttgattatagacat
agtgaaaccagtgcaacagccctgatggttgctgcaggacgaggctttacaagtcaagta
gagcagttaattagtatgggagccaatgttcatagcaaagcatcaaatggctggatggct
ttagattgggctaaacactttggacagactgaaattgtggatcttctagaatcttacagt
gcttcattggagtttggcaatctagatgaaagttctctggtccaaacaaatggaaatgac
ctcagtgcagaagacagagagctcctgaaagcttaccatcacagttttgatgatgagaag
gtagacttggatttgatcatgcatcttctatacaacatctgtcatagttgtgatgctggt
gcggtcctaatttttctgcccggatatgatgaaatagttggtctcagggatcgcatcctg
tttgatgacaagcggtttgctgacaatacacatagatatcaagtctttatgcttcattca
aatatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgttcgaaaa
ataatcctttccaccaacattgctgaaaccagcatcacagtcaatgatgttgtctttgtt
attgattcaggcaaagtgaaagagaaatcctttgatgcattgaactttgtaacaatgtta
aaaatggtgtggatttccaaagctagtgctattcagcggaaaggcagagctgggcgatgt
agacctggaatttgtttccgtctgtttagtagactacgatttcagaatatgttggaattt
cagactccagaacttttgagaatgccattacaggagctttgtttacacaccaagctgtta
gccccagtgaattgcaccattgctgatttcctgatgaaagcccctgaacctccaccagct
ttaattgtaagaaatgcagtacagatgcttaagacaatagatgccatggatgcctgggaa
gatctgacagaacttgggtatcatttggctgacttgccagtggagccccatcttggcaaa
atggtcctgtgtgccgttgttctgaagtgtctggacccgatccttacaattgcctgcaca
ctagcgtaccgggacccttttgttctgccaacgcaggcctctcaaaagcgtgcagccatg
ctctgccggaagcgcttcactgcgggcaccttcagtgaccacatggcccttctcagagca
ttccaggcatggcagaaagcacggagtgatgggtgggagcgagccttctgtgaaaagaac
tttctgtcacaagccactatggaaataattataggaatgagaacacagctgctcggtcaa
cttagagcatcaggttttgttagagcacgaggtggtggtgacattcgagatgttaacaca
aactccgagaactgggctgtcgtaaaggctgcactggtggcaggcatgtatcctaattta
gtccatgtggacagagagaatgtagtactgacagggccaaaggagaaaaaagtacgattt
catcccacttcagttctcagtcagcctcaatataaaaagatacctccagccaatggtcag
gccgcagcaatccaggcactgcccacagattggcttatttatgatgagatgactagagcc
catcgaatagctaatattagatgttgttcagcagtgacgcctgtcactgtattggttttc
tgtggaccagctcgactggcaagcaatgctcttcaggaaccttcatcttttagagatggc
attcccaatgatagtagtgacagtgaaatggaggaccgaaccactgctaacttggctgcc
ttgaaacttgatgagtggcttaattttaaactagagccagaggctgccagtttattgctg
cagctcagacagaagtggcatagtctgtttttacgccgaatgagagctccatctaaacct
tggtctcaagtggatgaagccaccatacgagcaattatagctgtgttaagtacagaggag
caatctgcaggtttacagcagccgtctgggattggccagaggccaagacccatgtcttca
gaagaacttcctttggcatcatcttggaggtcaaataatagtaggaaaagctcagcagac
accgaatttcctgatgagtgtactactgcagaaagagtactgacgaaatctccatctcca
gccttacacccacctcagaagtacaaagacagaggaattttacatccaaagcggagcact
gaggaccgatcagaccagtgttctgtgaagtctgcggacagcagcacctacccaagtcct
tgtgcgagtccttccccaccatcttcaggaaagggctcaaaatctccttcaccaagaccc
aacatgcctgttcggtacttcataatgaagagtagcaatctgagaaaccttgaaatttct
caacagaagggcatctggtctacaacccctagtaatgagcggaagctaaatcgggccttc
tgggagagcagcatggtttacttggtattttctgttcaaggatctgggcatttccagggg
ttttccaggatgtcttctgagataggaagggagaaaagtcaagactggggctcagctggc
ctgggcggggtgtttaaggtcgagtggatacgaaaagagagccttcctttccagtgtgca
caccacctactcaacccgtggaatgacaacaagaaggtgcagataagccgagacgggcag
gaactagaaccacaggttggtgaacagttgctccagttatgggaacgccttcctttggga
gaaaaacccacaagtgactga
DBGET
integrated database retrieval system
