Perognathus longimembris pacificus (Pacific pocket mouse): 125345521
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Entry
125345521 CDS
T08928
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-1-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125345521
Transcription factors [BR:
plop03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125345521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
125345521
NCBI-ProteinID:
XP_048193613
LinkDB
All DBs
Position
Unknown
AA seq
388 aa
AA seq
DB search
MYSMMMETDLHSPGGGGGGGGGGGPAPTSLAGAGGGAGGGAGAKAGQDRVKRPMNAFMVW
SRGXRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYR
PRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGSAAVGQRLESPGGAAGGGYAH
VNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHAHHPHAHPHNP
QPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAAGGAHQNSAVAAAAA
AAAASSGALGALGSLVKSEPPSGSPPAAAAHSRAPCPGDLREMISMYLPAGEGADPAAAA
AQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcggcgggggcggcggg
ggcggcggcggcccggcccccacgagcctggcgggcgcgggcggcggcgcgggcggcggc
gcgggcgccaaggccgggcaggaccgcgtcaagcggcccatgaacgccttcatggtgtgg
tcgcgcggcnagcggcgcaagatggcccaggagaaccccaagatgcacaactcggagatc
agcaagcggctgggcgccgagtggaaggtcatgtcggaggcggagaagcggccgttcatc
gacgaggccaagcggctgcgcgcgctgcacatgaaggagcacccggactacaagtaccgg
ccgcgccgcaagaccaagacgctgctcaagaaggacaagtactcgctggccggcgggctg
ctggcggcgggcgcgggcggcggcggcgcggccgtggccatgggcgtcggcgtgggctcg
gcggccgtgggccagcgcctggagagcccgggcggcgcggcgggcggcggctacgcgcac
gtcaacggctgggccaacggcgcctacccgggctcggtggccgccgccgccgccgccgcg
gccatgatgcaggaggcgcagctggcctacgggcagcacccgggcgcgggcggcgcgcac
ccgcacgcgcacccggcgcacccgcacgcgcaccacccgcacgcgcacccgcacaacccg
cagcccatgcaccgctacgacatgggcgcgctgcagtacagccccatctccaactcgcag
ggctacatgagcgcgtcgccctcgggctacggcggcctcccctacggcgccgcggccgcc
gccgccgccgccgccgcgggcggcgcgcaccagaactcggcggtggcggcggcggcggcg
gcggcggccgcgtcgtcgggcgcgctgggcgcgctgggctcgctggtgaagtcggagccg
ccgagcggcagcccgcccgccgccgccgcgcactcgcgcgcgccctgccccggggacctg
cgggagatgatcagcatgtacctgccggccggcgagggcgcggacccggcggccgccgcc
gcgcagagccgcctgcactcgctgccgcagcactaccagggcgcgggcgcgggcgtcaac
ggcacggtgcccctcacgcacatctag
DBGET
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