Perognathus longimembris pacificus (Pacific pocket mouse): 125346025
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Entry
125346025 CDS
T08928
Symbol
Trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plop03016
]
125346025 (Trub1)
Enzymes [BR:
plop01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
125346025 (Trub1)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
125346025 (Trub1)
Prokaryotic type
125346025 (Trub1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
125346025
NCBI-ProteinID:
XP_048194140
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All DBs
Position
2:complement(12295943..12321320)
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AA seq
346 aa
AA seq
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MAAPDAAVVSTSTLEIDTASVSETAETTSSMVVTSVAAAIAAATRSGSEARVSKTALAAK
LLSLSGVFAVRKPKGPTSAELLNRLKEKLLAEAEMPSPEWTKRKKQTLKIGHGGTLDSAA
QGVLVVGIGRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITQEDIEG
ILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFT
LDVECGGGFYIRSLVSDIGKELSSCASVLELTRTKQGPFTLEEHALPEDKWTIDDIAQCL
EHCSPLLPAELALKKSKPEGSREQVLSCEYITLNEMKGEQDGIKTL
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcctgacgcggcggtggtgtctacatcgacgttggaaatagacacagcctcc
gtctccgagactgccgaaacaacctcgtccatggttgttacctcagtagccgcggcgatt
gcggccgcgactaggagcgggtccgaagccagggtctccaagaccgctttggctgctaag
ctgctgtcgctcagcggcgtgttcgcggtgcgcaagcccaaggggcctacctcggccgag
ctgctcaaccggctgaaggagaagctgctggcagaagctgaaatgccttctccagaatgg
accaagaggaaaaagcagactttgaaaattgggcatggagggacccttgatagtgcagcc
caaggagttctagtggttggcattggaaggggaacaaaaatgttgaccagtatgttgtca
gggtctaagaggtatattgccatcggagaactggggaaagctactgacacgttagattct
acaggaaaagtaacagaagagaaaccctacgataaaataacacaagaagatattgaaggt
attctacagaaatttactgggaatataatgcaggtaccccctctctattcagcactaaag
aaagatggacagagactttccactttaatgaagagaggtgaggtcgtagaagcaaaacct
gccagaccagtcactgtgtacagtatctccctccaaaaattccagccaccgtttttcaca
ttagatgttgaatgtggcggtggtttttacatcagaagcttggtcagtgacattggcaaa
gaactctcttcctgtgccagtgtgctagagctgacccggaccaaacaggggccatttacc
ctggaagagcatgctcttcccgaagacaagtggacaattgacgacattgcccagtgcctt
gagcactgttcaccccttctccccgcagagttggcactgaaaaagtccaaacctgagggg
tctcgtgagcaggttttgagctgtgaatatataaccctaaatgagatgaaaggagagcag
gatggaattaagacactttga
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