Perognathus longimembris pacificus (Pacific pocket mouse): 125346068
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Entry
125346068 CDS
T08928
Symbol
Smc3
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04110
Cell cycle
plop04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
125346068 (Smc3)
04114 Oocyte meiosis
125346068 (Smc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125346068 (Smc3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
plop00535
]
125346068 (Smc3)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
125346068 (Smc3)
Meiosis-specific proteins
Cohesin complex and associated proteins
125346068 (Smc3)
Proteoglycans [BR:
plop00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125346068 (Smc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_23
AAA_29
OmpH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
125346068
NCBI-ProteinID:
XP_048194236
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All DBs
Position
2:complement(15583094..15624974)
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AA seq
1217 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIK
QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEER
GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
EDTEANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLDHFRRKGINQHVQNGYHGIVMNNF
ECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAY
PETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELEAINKRVKDTMARSEDLDNSIDKTEAGIKELQKS
MERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
SLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERG
SGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
ITAEMAKDFVEDDTTHG
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtacataaagcaggtgattatccaagggtttcgaagttacagagatcaaacaattgta
gatcctttcagttcaaaacataatgttattgtgggcagaaatggatctggaaaaagcaac
tttttttatgcaatccagtttgtcctcagtgatgagtttagtcatcttcgtccggaacag
cgactggctttgttgcacgagggtaccggtccccgtgttatttctgcttttgtggaaatt
atttttgataattcagacaaccggttaccaattgataaagaggaagtttcacttcggaga
gttattggtgccaaaaaagatcagtatttcttagataagaagatggtcacgaaaaatgat
gtgatgaacctccttgaaagtgctggtttttctcgaagcaatccttactatattgttaaa
caaggaaagatcaaccagatggcaacagcacctgattctcagagacttaagctattaaga
gaagtggctggtactagggtgtatgatgaaaggaaagaagaaagcatctccttaatgaaa
gaaacagagggcaagcgggaaaaaatcaacgagctgttaaagtacattgaagagagatta
catactttagaggaagaaaaggaagaacttgctcagtatcagaaatgggataaaatgagg
cgagccctggaatataccatttacaatcaggagcttaatgaaacccgagctaaacttgat
gagctttctgctaagcgagaaaccagtggagaaaaatccagacaattaagagatgctcag
caggatgcaagagataaaatggaggacattgagcgccaggttagagaattgaaaacaaaa
atttcagctatgaaagaagaaaaggaacagctcagtgccgaaagacaagagcagattaaa
cagaggactaagttggagcttaaagccaaggatttacaagatgaattggcaggcaatagt
gaacaacggaaacgtttgttaaaagagaggcagaagctgcttgaaaaaatagaagaaaag
cagaaagaactggcagaaacagaacctaaattcaacagtgtaaaagaaaaagaagagcga
ggaattgctaggttggctcaagctacccaggaaaggacagacctttatgcaaagcagggt
cgaggaagccagtttacatcaaaagaagaaagggataagtggataaagaaggagctcaag
tctttagatcaagctattaatgacaagaagagacagattgctgctatacataaggatttg
gaggatactgaggcaaataaagagaaaaatctggagcagtataataaactggatcaagat
ctcaatgaagtcaaagcccgagtagaagaactggacagaaaatattatgaagtaaaaaat
aagaaagatgaattacaaagtgaaagaaattacttgtggagagaggagaatgcagaacag
caagcacttgctgctaaaagagaggaccttgagaagaagcagcagctccttcgagcagcc
acaggaaaggctatcctaaatggaatagacagtataaacaaagtgctggaccactttcgt
cggaaaggaataaaccagcatgttcagaacggctatcatggcattgtgatgaacaacttt
gaatgtgagcccgccttctacacgtgtgtagaggttactgctgggaacaggctgttttat
cacattgtggattcagatgaagtcagcacgaagattttaatggaattcaataagatgaat
cttcctggagaggtcactttcctgcctcttaacaagttagacgtcagggacactgcttat
cctgaaaccaatgatgctattcctatgatcagtaagctgagatacaatccccgatttgac
aaggctttcaaacatgtgtttggaaagacactgatctgtcgaagcatggaagtttcaacc
caactggcccgtgctttcactatggattgcattactttggaaggtgaccaagtcagtcac
cgaggagctttaactggaggttattatgacacaagaaagtctcgacttgaattgcagaaa
gatgttagaaaagctgaagaagaactaggggaacttgaagcaaaactcaatgaaaaccta
cgcagaaatattgaaagaattaataatgaaattgatcagttgatgaaccaaatgcagcag
attgagactcaacaaagaaaatttaaagcatccagagacagcatattatcggaaatgaag
atgcttaaagagaagaggcagcagtcagagaaaaccttcatgcctaagcaacgaagctta
cagagtttggaggcgagtttgcatgccatggaatccaccagagagtcactgaaagcggag
ctggggaccgatttgctttctcagcttagtctggaagatcagaaaagagtggatgcactg
aatgatgagattcggcaacttcaacaggaaaacagacagttgctaaatgaaagaattaaa
ttagaaggcattatcactcgagtagaaacttaccttaatgagaatctgagaaaacgcttg
gaccaagtagaacaggaacttaacgaactgagggagacggagggaggcacggtgctgacc
gccaccacatctgaactcgaggccatcaacaaaagagtaaaagacaccatggcacggtcc
gaagatttggacaactccattgataaaacagaggctggaattaaggagcttcaaaaaagt
atggagcgctggaaaaatatggaaaaagaacacatggatgctataaaccatgatactaaa
gaactggaaaagatgacaaatcggcagggcatgctgttaaagaaaaaagaagaatgtatg
aagaaaattcgagaacttgggtcacttccccaggaagcgtttgaaaagtaccagacgctg
agcctcaagcagttgtttcggaaactcgaacagtgcaacacagaactaaagaagtacagc
catgtaaacaaaaaggctttagatcagtttgtaaatttttctgagcagaaggaaaagtta
ataaagcgacaagaagagttggatagagggtacaaatccattatggaactgatgaatgta
cttgaacttcgaaaatatgaggctattcagttaacttttaaacaggtatcaaagaacttc
agtgaagtattccagaagcttgttcctggtggcaaagctactttggtgatgaagaaaggc
gacgtggagggcagccagtcccaggacgaaggagaagggagcggggaaagcgagaggggc
tccgggtcacagagcagtgtcccgtcagtcgaccagttcaccggagttggcattagggtg
tccttcacaggaaaacaaggagaaatgagggagatgcagcagctttccggggggcagaaa
tccttggtggctcttgctctgatttttgccattcagaagtgtgacccagctcctttctac
ttgttcgacgagatcgaccaggctctggatgcgcagcacaggaaggccgtatcagatatg
attatggaacttgctgtacatgctcagttcataacaactacttttcggcctgaactactc
gagtcagctgacaaattctatggtgtaaaattcagaaacaaggttagccacattgacgtg
atcacagcagagatggccaaggacttcgtagaagacgacaccacgcacggctga
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