Perognathus longimembris pacificus (Pacific pocket mouse): 125346093
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Entry
125346093 CDS
T08928
Symbol
Pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125346093 (Pdcd11)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
90S particles
Other 90S particles
125346093 (Pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
Suf
OB_RRP5
TPR_14
TPR_19
ARM_TT21
TPR_CcmH_CycH
DUF7017
ARM_TT21_5th
DUF2110
PPR
UTP6_C
TPR_7
NRDE-2
Motif
Other DBs
NCBI-GeneID:
125346093
NCBI-ProteinID:
XP_048194280
LinkDB
All DBs
Position
2:complement(20327780..20369747)
Genome browser
AA seq
1865 aa
AA seq
DB search
MATLEESFPRGGTKKTHKPEKSFQKPVEQDNLFDISTEESTKRKKIQKVKTETKRLKIEK
RESNKTKKEKFEILSIESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYNK
KLNEQVAQDEPLQDLLQLTELFSPGMLVRCVVSHVDISENGKKSVRLSLNPKNVNNVLSA
EALKPGMLLTGTVSSLEDHGYLVDIGVGGTRAFLPLPKAQEYIRQKNKGATLKVGQYLTC
IVAEVKSNGGVVGLSIGHSEISTALATEEQNWTLSNLLPGLVVKAQVQKVTPFGLTLNFL
TFFTGVVDFMHLEPRKVGTYISKQAVRACILCVHPRTRIVRLSLRPIFLQPGRPLTRLSC
QHLGAVLDDVPVQGFFNKAGATFTLKDGALAYARLSHLSDSKKAFNPDAFKPGNTHKCRI
IDYSQMDELALLSLRTSIIKAQYLRYHDIKSGAVVKGKVLTVKPFGMLVKVGEQIKGLVP
IMHLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLIMTLKKTLITSKLPVITSYNDAKP
GLRTHGVILRVRDYGCIVKFYNDVQGLVPKPELSAQYIHDPEKVFYAGQVVKVAVLNCEP
SKERMLLSFKLLSDPEPENENVGHSQKKESAVNVGQLVDVKVLEKTKDGLEVAVLPHNTP
AFLPTPHLSDHVTNGPLLYHWLQAGDTLHRVLCLSQCEKHLLLCRKPSLVSAVEGGQDPK
RFSEIQPGMLLIGFVRNIMDYGVFVQFPSGLSGLAPKALMSDKFVTTPRDHFVEGQTVVA
KVTNVDEEKQRMLLSLRLSDCTLGNSASSSLLLLSQCLEELQGVRSLMSNRDSVLIQTLA
EMTPGMVLDLVVQEVSEDGSVVFSGGPVPDLVVRASRYHRAGQEVEPGQKKKVVVLNVDM
LELVVHVSLSQHLVNRKAKRLKKGSKHQAIVQHLEESFAVASLVETGQLVAFSLTSHLND
TFRFDSEKLQVGQGVCLTLKTTEPGVTGLLLAVEGPAAKRTMGQIEKNSEVVDEEEEEDD
PTLTVGTKKKHSLAIGDIVTGTVKSVKATHVVVTLENDIIGCIHASNILDDVPVGSSPTT
KLKAGKKVTARVIGGRDVKTFKFLPISHPRFIRTILELSVRPSDLEKDGHTALDTYTVSP
MEKIKQFQVGQTVTCFLKKFNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKRPDKNFRI
GQALRATVVSSNSSKAFLCLSLIGPHKLERGEVAMGQVVTVIPNEGLTVSFPSGKMGRVS
IFHVSDSYSERPLEDFIPQKVVRCYVLSTADQELALSLRSSRTNPETKNKIEDPEINSIQ
DIKEGQLVRGYVKSIQPNGVLLGLGPSVEGLAQYSHVSRCSQPRKDLYNRYLPEGKLLTA
RILSLNHQKNLVELSFLPSDTGKPDVFSASPEPPLVNQEKKDQKEEEKKNQKRKEKNSQK
GKEEVKLPSQEKKEPQRPQKRQGKRERQPSESKQERVNKRLKKAGTLEEDKSSVEVYYRE
EEEEIEVPKLLPKGRQTKSTDVPRLQLSSGFAWDVGLDSLTPALPPREESSDSEEEEKPH
QATKKKSKKEKELEKQKAEKELCRIEEALMDPGRQPQSADDFDRLVLSSPNSSILWLQYM
AFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFDRAVQ
YNEPLKVFLHLADIYTKSEKFKEADELYNRMLKRFRQDKAVWIKYGAFVLRRKQAGASHR
VLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENMLSTYPKRTDVWSVYIDMVI
KHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKEVQAVKAKALEYVEAKS
SVLED
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccctcgaggaaagtttcccccgagggggtacaaagaaaacccacaaaccagag
aaatctttccagaagccagttgaacaagacaacttatttgatatttctactgaagaatcc
accaaaaggaaaaagatccagaaagtgaaaacagaaacaaagaggttgaaaattgaaaag
agagaaagcaacaagactaaaaaagaaaagtttgaaatccttagtattgagtctctatgt
gagggcatgcggatcttgggttgtgtgaaagaggtaaatgagctggaactggtggtcagt
ctccccaatggccttcagggctttgtacaagtgactgaaatctgtgatgcttacaacaag
aagctgaatgagcaggtggcacaagatgaacctctgcaggacttgctccaattaactgaa
ctgttctcacctggaatgctggtgagatgtgtggtgagccacgtggacatctcagagaat
ggcaaaaagagtgtcaggctctctctaaaccccaaaaatgtcaacaatgtgctgagtgca
gaggctctgaagcctggcatgctgctgacaggcactgtatcaagcctggaagaccatggc
tacctcgtggacatcggtgttggtgggaccagagcatttttaccactgcccaaagcacag
gagtacatccgccagaagaacaaaggtgccacactgaaggtgggtcagtatttgacctgc
attgttgccgaggtgaaaagcaatggaggagttgttggtctgtctataggacattcagag
atttctactgccttagcaactgaggagcaaaactggaccctgagtaacttgctgccaggg
ctggtggtcaaagctcaggtacaaaaggtgactccatttggccttacactgaattttctc
acattcttcacgggtgtcgttgactttatgcacctggaacccaggaaagttgggacctac
atctcaaagcaagcagtgcgggcctgcatcctctgtgttcatcctcgcaccagaattgtg
cgcctgagcctgcgtcccatcttcctgcagcctggacgcccactcacccggctctcttgc
caacacctaggagctgtgctggatgatgttcctgtccaggggtttttcaacaaggctgga
gccaccttcacactgaaggatggagctctggcctatgcccggctcagccatctctctgat
tctaagaaagccttcaatcctgatgccttcaagccagggaacacgcacaagtgtagaatt
attgactatagtcaaatggacgagctggccttgctgtctctgagaacatctattattaaa
gctcagtatcttagatatcatgacatcaaaagtggagcagtggtaaagggcaaagtgcta
accgtaaaaccatttgggatgctggtgaaggtaggggagcaaataaaaggcctggtaccc
atcatgcacctggctgacatcctgataaagaatcccgagaagaagtaccacattggagat
gaggtcaagtgccgggttttactttgtgaccctgaagccaagaagttgataatgaccctg
aagaaaaccctgatcacatccaaactgcctgtcattacctcctataatgatgccaagcct
ggtctccggactcatggtgtcatcctcagggtcagggactatggctgtattgtgaagttc
tataatgatgttcagggactggtgcccaagcctgaactcagtgcgcaatatatccatgac
ccagagaaagtcttttatgctggccaggtggtgaaggttgcagtgctgaactgtgagcca
tccaaagagaggatgctcttatccttcaagctcttgagtgatccagagccagagaatgag
aatgttggacacagtcagaagaaagaaagtgctgttaacgttgggcagttggtggatgtg
aaggttttggagaaaaccaaagatggcctggaggtggcagtcttgccccacaacacccct
gctttccttcccacgcctcatctatcagaccacgtcaccaatggccctctgttgtaccac
tggctccaagcaggtgacacccttcaccgagtgttgtgtctgagccagtgtgagaaacat
cttctcctctgtaggaagccatctttggtctccgcagtagaaggtggccaggatcccaaa
agattctcagaaatacagcctggaatgcttctcattggttttgtgaggaacatcatggac
tatggtgtgtttgtccagttcccctcaggtctcagtggactggcccccaaagctctcatg
agtgacaagtttgtgaccaccccacgtgaccactttgttgaggggcagactgtggttgcg
aaggtgaccaatgtggatgaggagaagcagcgcatgctgctgtcgttgcggctgtcagac
tgcaccttggggaattctgccagttccagcctcctccttctgagccagtgtctggaggag
ctgcagggtgtgcgcagcctcatgagcaaccgagactctgtgttgatccagacgctggct
gagatgaccccaggaatggtgcttgacctggttgtgcaggaagtgtcagaggatggctca
gtggtgttcagtgggggccccgtgcctgacctggtcgtgagagctagcagatatcatcgg
gcagggcaggaggtggaacctgggcagaagaagaaggttgtggtcctcaatgttgatatg
ttggagttggtagtacatgtttctctcagccagcacttggtgaatagaaaagctaaaagg
ctgaagaaaggcagtaagcaccaagcaatcgtgcaacacctggaagagtcctttgctgtg
gcctctttggtagagactggccaactagtagctttctccctgacctctcacctcaatgac
accttccgatttgactctgagaagttgcaggtgggacagggagtctgcctaaccctcaag
actacagaaccaggagtgactggccttcttctagctgttgaggggccagctgctaagagg
accatgggacagattgagaagaattccgaagtagttgatgaggaggaagaggaagatgac
ccaactctgactgtagggactaaaaagaagcactccctggctatcggggatatagtcact
gggactgtcaagtctgttaaggctactcatgtggttgtgactctggaaaatgacatcatt
ggctgtatccacgcctccaatattctagatgatgttccagtcggctcctctcctactacc
aagctgaaagctgggaagaaggtcactgcccgagtgatcggtgggcgagatgtgaagaca
tttaagtttctgccaataagtcaccccagatttattcgaaccatcctggagctgagtgtt
cggccaagtgatctggagaaggatggtcacactgctcttgacacatatactgttagcccc
atggagaagattaagcagttccaggttggccagactgtgacttgcttcttaaagaagttc
aatgtggttaagaaatggcttgaggtggagattgcaccagacatccgagggagaattccc
ttgctgctcacttcacttagcttcaaggtcttaaaacgcccagataagaatttccggatt
ggccaagccttgagggccaccgttgtcagttcaaattcctctaaggccttcttgtgtctc
tcgctcataggtcctcacaagcttgagagaggcgaagtagctatgggccaagtggtaaca
gtgatacccaatgagggactgactgtctccttcccctctgggaaaatggggagagtcagc
atatttcatgtgagtgactcctactctgagaggcctttggaggacttcatcccccagaag
gttgttaggtgttatgtcttgtccactgcagaccaagaattggctttgtcactgcgatca
tccaggacaaacccagagacgaaaaacaaaatagaagatccagagattaactccatccag
gacattaaggaagggcaacttgtgaggggttacgtgaaatctatccaaccaaatggcgtg
ctcttaggccttggcccttccgttgagggtctggcccagtactcacacgtctcccgatgc
agccagcccaggaaagacctttataacagatacctccctgaagggaagctgcttactgcc
aggatcctaagcctgaatcatcagaagaacctggtagagctgtcgttccttcccagtgat
actgggaagccagatgtgttttctgcctctccggaaccaccacttgtgaatcaagaaaag
aaggaccaaaaggaagaagagaagaagaatcagaaaaggaaagagaagaacagccagaag
gggaaagaggaggtgaagctgcccagccaagagaagaaagagccccagaggccacagaag
aggcagggcaaacgggagcgccagccatctgagagcaagcaggaaagagtgaacaagagg
ctgaagaaggctggcacgttggaggaggacaagagtagtgtggaagtgtattaccgggaa
gaagaagaggagatagaggtgccaaagttgctgcccaaggggaggcagaccaagtccaca
gacgtgccccggctccagctctcctcgggtttcgcttgggatgtggggctcgactctctg
acccccgccttgccacctcgagaagagagctcagacagcgaggaggaggagaagcctcac
caagccacgaaaaagaaaagcaagaaggaaaaggagttggagaagcagaaggctgagaaa
gagctatgccgcatcgaggaagcgctcatggatcccggacgccagccacagtcagcggat
gacttcgaccggcttgtgctgagctccccaaacagctccatcctgtggctgcagtacatg
gctttccacctgcaagccaccgagattgagaaggcccgggctgtggcggagagggccctg
aagaccatctccttcagagaggagcaggagaagctgaatgtgtgggtggcactgctgaac
ctggaaaacatgtacggctcccaggagtccctgaccaaggtcttcgaccgggctgtgcag
tacaatgagcctctcaaggtctttcttcatctggctgacatctacacaaagtctgagaag
ttcaaggaagctgatgagctctacaaccggatgctgaagcgtttccggcaggacaaagct
gtttggattaagtatggtgcatttgttctgcggaggaagcaagctggagccagtcacagg
gtgcttcagcgagccctagagtgcttacccagcaaggaacatgtggatgtgatcgccaag
tttgcccagctggagttccagctgggagatgcggagcgtgccaaagccatttttgaaaac
atgctgagtacctacccaaagcgcacagatgtctggtcagtctacattgacatggtcatc
aagcatggcagccagaaggaagtccgggacatttttgagcgagttattcatctgagtctg
gcccccaagagaatgaagttctttttcaagcgctacctggactatgagaagcagcatggc
actgagaaggaggtgcaggcagttaaggcgaaggccttggaatatgtggaggccaagagc
tcagtgctggaggactag
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integrated database retrieval system
