KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125346094
Entry
125346094         CDS       T08928                                 
Symbol
Taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125346094 (Taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plop03021]
    125346094 (Taf5)
   03036 Chromosome and associated proteins [BR:plop03036]
    125346094 (Taf5)
Transcription machinery [BR:plop03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     125346094 (Taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     125346094 (Taf5)
Chromosome and associated proteins [BR:plop03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     125346094 (Taf5)
    STAGA complex
     125346094 (Taf5)
    TFTC complex
     125346094 (Taf5)
    SAGA complex
     125346094 (Taf5)
    SLIK complex
     125346094 (Taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_Gbeta TFIID_NTD2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_SPT8 WD_LRWD1 Tricorn_2nd Beta-prop_DCAF12 Beta-prop_Nup120_160 PEP5_VPS11_N RAB3GAP2_N CDK5RAP3 Beta-prop_RIG_1st eIF2A Cytochrom_D1 Beta-prop_ACSF4 LisH_PAC1 ABM-like PROPPIN
Other DBs
NCBI-GeneID: 125346094
NCBI-ProteinID: XP_048194282
LinkDB
Position
2:complement(20376912..20394421)
AA seq 801 aa
MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGGGGTPNNGPNGGGGHVAAAAAAAGG
DGGTPKPAVAVSAATPAGAAPVPGTAAESGSPHDRQTLLAVLQFLRQSNLREAEEALRRE
ARLLEEAAAGSGAPGEVDGAGAEAASSLLSRVTASAPGSGGPDPPGTGASGVTVVSGSAS
GPAASGKVGIVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQL
FYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLD
FRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSL
AGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDP
NAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVT
DDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKIL
YGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYY
FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNG
NCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRF
SRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTP
VVHLHFTRRNLVLAAGAYSPQ
NT seq 2406 nt   +upstreamnt  +downstreamnt
atggcggcgctggcggaggagcagacggaggtggcggtcaagctagaacctgaggggccg
ccgacgctgctgcctcctcaggcgggcgatggcgcgggcgagggcggcggcggcactccc
aataacggccccaacggcggcggcgggcatgtggcggcggcggcagcggcggccggcggg
gatggcgggacccccaagcccgcggtggctgtgtccgccgctaccccggcgggggcggcc
ccggtgcccggcaccgcggcggagtcgggttctcctcacgaccggcagacgctgctggcg
gtgctgcagttcctccggcagagcaaccttcgcgaggccgaggaggcgctgcggcgtgag
gcccggctgctggaggaggcagcagcgggctccggagccccaggagaggtggacggggcc
ggcgctgaggcggcaagctcgctcctcagtcgggtcacggcctcggcccccggctccggg
ggccccgatcctccgggcaccggcgcttcgggggtcacggtcgtctcaggttcagcctca
ggtcccgccgcgtctgggaaagttggaattgtagctgtggaagaccagccagatgtcagt
gctgtcttgtcggcctacaaccaacaaggagaccccacaatgtatgaagagtattatagc
ggactaaaacacttcattgaatgttctctggactgccatcgggcagaattatcccaactg
ttttatcctctgtttgtacacatgtacttggagctagtctataatcaacatgaaaatgaa
gcaaaatcattctttgagaagttccatggagatcaggaatgttattaccaggatgaccta
cgagtattatctagtcttaccaaaaaggaacacatgaaagggaatgaaaccatgttggac
tttcgaacaagtaaatttgttctgcgtatttcccgtgactcgtaccaactcttgaagagg
catcttcaggagaaacagaacaatcagatatggaacatagttcaggagcacctctacatt
gacatctttgatgggatgccgcgtagtaagcaacagatagatgcgatggtgggaagtttg
gcaggagaggctaaacgagaggcaaacaaatcaaaggtattttttggcttgttaaaagaa
ccagaaattgaagtgcctttggatgatgaagatgaagaaggagaaaatgaagaaggaaaa
cctaaaaagaagaaacctaaaaaagatagtattggatccaaaagcaaaaaacaagatccc
aacgctccacctcaaaacagaatccctcttcctgagctaaaagattcagataaattggat
aagatcatgaatatgaaagaaaccaccaaacgagtgcgccttgggccagactgcttacct
tccatttgtttctatacattccttaatgcttaccagggcctcactgcagtggatgtcact
gatgattctagtctgattgctggaggttttgcagattcaactgtcagagtgtggtctgtg
acacccaaaaagcttcgtagtgttaaacaagcatcagatcttagtctcatagacaaagaa
tcagatgatgtcttagaaagaatcatggatgagaaaactgcaagtgagttgaagatttta
tatggtcacagtgggcctgtctatggagccagcttcagtccggataggaactatctgctt
tcctcttcagaggatggaactgttagattatggagccttcaaacatttacttgcctggtg
ggatataaaggacacaactacccagtatgggacacacagttttctccatatggatattat
tttgtgtcagggggccatgaccgagttgcccgactttgggctacagaccactatcagcct
ttaaggatatttgctggccatcttgctgatgtgaattgcacaagattccatcccaattca
aattatgttgctactggctctgcagacaggactgtgcggctctgggatgttctgaatggt
aactgtgtaaggatcttcacaggacacaagggaccaattcattccttgacattttctccc
aatgggagattcctggctacaggagcaacagatggcagagtactcctctgggatattgga
catggtttgatggttggagaattaaaaggccatactgatacagtctgttcacttagattt
agtagagatggtgaaattttggcttcaggttcaatggataatacagtccggttatgggat
gccatcaaagcatttgaagatttagagactgatgactttactacagccactggccatata
aatttacctgagaattcacaggagttgttattgggtacatatatgaccaaatcaacaccg
gtcgtacacctccattttactcgaagaaacttggttctagctgcaggagcttatagtcca
caataa

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