Perognathus longimembris pacificus (Pacific pocket mouse): 125346139
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Entry
125346139 CDS
T08928
Symbol
Abca1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop02010
ABC transporters
plop04148
Efferocytosis
plop04975
Fat digestion and absorption
plop04979
Cholesterol metabolism
plop05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125346139 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125346139 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
125346139 (Abca1)
04979 Cholesterol metabolism
125346139 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
125346139 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
plop02000
]
125346139 (Abca1)
Transporters [BR:
plop02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
125346139 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
125346139
NCBI-ProteinID:
XP_048194368
LinkDB
All DBs
Position
1:complement(137920450..138044286)
Genome browser
AA seq
2263 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARKLLLYSQKDT
SMKDIHRVLRALQQIKNSGPGLKLQDFLADNETFSGFLYHNLSLPRPTVDRLLQANVSLH
KVFLQGYQLHLTSLCNGSKLGDIIQIGELEVSELCGQPREKLHAAEQVLRSNMDILKPMV
IGLNSTSSFPIQQLVEATRTLLDSLGSLAQELFSMRSWSDMRQEVMFLTNVNGSGSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEEDADSFYDNSTTPYCNDMMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEGMWQELS
PKIWTFMESSQEMDLVRMLLESKSNDHFWEQQLDGLDWTAQDIMAFLAKHPKDIQSSNGS
VYTWREAFNETNRAVQTISRFMECVNLNKLEPISTEVRLINKSMELLDERKFWAGIVFTG
VSPGSTELPRHVKYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGSEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSVKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPMEEDGFSLTTAVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEECDEKSHPGSNQKGISEICMEEEPTHLKLGVS
IQNLVKVYRDGMKVAVDGLALNFYESQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKVVPELPPAGQSGGRGGEVQRLVALTQDVSAISNLIRKHVLEARLVE
DIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVD
AETSDGTLPARRNRRAFGDKQSCLRPFTEDDAIDPNDSDIDPESRETDLLSGMDGKGSYQ
VKGWKLTQQQFLALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLE
LQPWMYDEQYTFVSNDAPEDIGTQELLNALTKDPGFGTRCMEENPIPDTPCLVGEEEWTT
AAVPQSIVDLFQNGNWTMENPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQNTADILQ
NLTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSQEVNDAIKQV
KKHLRLTKDSSADRFLNSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANL
QKGENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQ
ERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVVIIFICFQQKSYVSSTNLPVL
ALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNN
INDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGEDRFVSPLSWDLVGRNLFAMAV
EGVVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELT
KIYRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTGGDAFLNKHSIL
SSIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYG
EKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVV
LTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGANPDLKPVQEF
FGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFV
NFAKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctggcctcagttgaggttgctgctgtggaagaacctgactttcagaagaaga
caaacatgtcagctgctgctagaagtcgcctggcctctgttcatcttcttcatcttgatc
tctgtccggctgagctacccaccctatgaacaacatgaatgccactttccaaataaagcc
atgccctctgcaggaacacttccttgggtccaggggattatctgtaatgccaacaatccc
tgcttccgttatccaacgcctggtgaggctcccggtgttgttggaaactttaacaaatcc
attgtgtctcgcctgttctcagatgcgcggaagcttcttttatacagccagaaagacacc
agcatgaaggacatacacagagttctgagagccttacagcagatcaagaattcgggccca
ggcttgaagcttcaggatttcctggcagataatgaaaccttctctggattcctgtatcac
aatctctctctcccaaggccgactgtggacagattgctgcaggcaaatgtcagtctgcac
aaggtatttttgcaaggttaccagttgcatttgaccagtctgtgcaatggatcaaaatta
ggagatatcattcaaattggtgagctggaagtttctgagctttgtggacaacccagggag
aaactgcatgcggcagagcaggtgcttcgttccaacatggacattctgaaacctatggtg
ataggactaaactccacatcttccttcccaattcagcaactggtggaagctactagaact
ttactggatagtcttgggagtctggcccaagagctgttcagcatgaggagctggagcgac
atgcggcaggaggtgatgtttctaaccaatgtgaatggtagcggctcctccacgcagata
taccaggcagtgtcccgtattgtctgtggccacccggaaggcggaggactgaagatcaag
tctcttaactggtatgaggacaacaactacaaagccctctttggaggcaatggcaccgag
gaagatgctgacagcttctatgacaactctacaactccttactgcaatgatatgatgaag
aatttggagtctagtcctctttctcgcattatctggaaagctctcaaacccctgcttgtt
ggaaagatcctgtatacaccagacactccagccacaagacaggttatggctgaggtgaac
aagaccttccaggaactggctgtctttcatgatctagaaggcatgtggcaggagctcagc
cctaagatctggaccttcatggagagtagccaagaaatggaccttgttcggatgctgttg
gaaagcaaaagcaatgaccacttttgggaacagcaattggatggcttagattggacagcc
caagacatcatggcatttctggccaaacacccaaaggatattcagtcctccaatggctct
gtatacacctggagagaggctttcaatgagaccaaccgggcagtccaaacaatatcacgc
ttcatggagtgtgtcaacctgaacaagctggaacccatatcgaccgaagtccgactcatc
aacaagtccatggagctgctggatgagaggaagttctgggctggtattgtgttcacaggt
gtcagtccaggcagcactgagctgccccgtcatgtcaagtacaagatccgaatggacatt
gacaatgtggaaaggaccaataaaatcaaggatgcgtactgggaccctggtcctcgggct
gacccatttgaagacatgcggtatgtctggggaggctttgcctatctgcaggatgtggtg
gagcaggcgatcatcagggtgttgaccggttctgagaagaaaactggtgtctatgtgcaa
cagatgccctacccctgttatgtagatgacatcttcttgcgggtaatgagccggtcaatg
cccctcttcatgacactggcatggatctactctgtggctgtgatcatcaagggcatcgtg
tatgagaaggaggcgcggctgaaggagacaatgcggatcatgggcctggataacggcatc
ctctggtttagttggttcatcagtagtctcatccctctacttgtgagtgccggcctactg
gttgtcatcttgaagttaggaaacctgctgccctacagcgaccccagtgtggtgtttgtc
ttcctgtctgtgtttgcggtggtgaccatcctgcaatgcttcctgattagcacactcttc
tcccgggccaacctcgcagcagcatgtgggggcatcatctactttacgctgtacctgccc
tatgtcctgtgcgtggcgtggcaagactatgtgggcttttcagtcaagatttttgcgagc
ctgctgtctcctgtggcttttgggtttggctgtgagtactttgctcttttcgaggagcaa
ggcattggggtgcagtgggacaacctctttgagagtcctatggaggaagatggcttcagt
ctcaccactgctgtgtccatgatgttgtttgacaccttcctctatggggtgatgacatgg
tacatcgaagctgtcttcccaggtcagtatggaatcccaaggccctggtattttccttgt
accaagtcctactggtttggtgaggaatgtgatgagaagagccacccaggttccaatcag
aaaggaatatcagaaatctgcatggaagaagaacccactcacctgaagctaggcgtgtcc
attcagaacctggtaaaggtttaccgagatggcatgaaggtggcagttgatggcttggca
ctgaatttttatgagagtcagatcacctcattcttgggccacaatggagcagggaagaca
accaccatgtccatcctaactggattgttccctcccacctcgggcactgcttacatcctg
gggaaggacattcgctccgagatgagcactattcgacagaatctgggtgtctgtccccag
cacaatgtcttgtttgacatgctgaccgtggaagagcacatctggttctacgcccgccta
aaggggctttcagagaaacatgtgaaggcagagatggagcagatggccctggatgttggt
ttgccacccagcaagctgaaaagcaaaacaagtcaactgtcaggtgggatgcagagaaag
ctatctgttgccctggccttcgtgggaggatccaaggttgtcattttggatgagcccaca
gctggtgtggacccatactctcgcaggggaatctgggaactactgctgaaataccgacaa
ggccgtaccattattctctctacacatcacatggatgaagcagacatcctgggagacagg
attgccatcatatcccatggaaagttgtgctgtgtgggctcatccttgttcctgaaaaac
cagctgggaacaggctattacctgaccctggtcaagaaagacgtggaatcctctctcagt
tcctgtaggaatagcagcagcacggtgtcatacttgaaaaaggtggtgcctgagcttccc
ccagctgggcagagtggaggcagaggaggcgaggtgcagaggctggtggcgctgactcaa
gatgtgtctgcaatctccaacctcatcaggaagcatgtgttggaagcccggctggtggaa
gacattggacatgagttgacctatgtgctgccatacgaagcagctaaggagggagccttt
gtggaacttttccatgagattgatgaccggctctcagacctgggcatttccagttatggc
atctcagagactaccctagaagaaatattccttaaagtggcagaagagagtggagtggat
gctgagacttcagatggtaccttgccagcaagacgaaacaggcgggcctttggggacaag
cagagctgtctgcgcccattcactgaagatgatgctattgatccgaatgactctgacatc
gacccagaatccagagagactgacctgctcagtggaatggatggcaaaggctcctatcag
gtgaagggctggaaactcacccaacaacagtttctcgctcttttgtggaagaggctgctg
attgccaaaaggagtagaaaaggattctttgctcagattgtcctgccagctgtgtttgtc
tgcattgctctggtgttcagcctgatcgtcccaccctttggcaagtaccccagcctggaa
cttcagccctggatgtacgatgagcagtatacgtttgtcagtaatgatgctcctgaggac
atagggacccaggaactcctgaatgccctcaccaaggaccctggctttggaacccgatgt
atggaagaaaacccaatcccagatacaccctgcttggtaggagaggaggaatggaccact
gctgccgttccccagagcatcgtagatctcttccagaatgggaactggacgatggagaac
ccttcgcctgcctgtcagtgtagcagtgacaaaataaagaagatgctgcctgtgtgtcct
ccaggggctggggggctgccacctccacaaagaaaacagaacactgcagacatccttcag
aacctgacaggaagaaacatttctgattatttggtgaagacctacgttcagatcatagca
aaaagcttaaagaataagatctgggtgaatgagtttcggtatggtgggttttctctgggt
gtcagtaattcgcaagcacttcctccgagtcaagaagttaatgatgctatcaagcaagtg
aagaaacatttgaggctgaccaaggacagttctgcagatcgatttctcaacagcttggga
aggttcatgaccggtctggataccaaaaacaatgtcaaggtatggttcaataacaagggc
tggcatgctatcagctctttcctgaatgtcatcaacaatgccattcttcgggctaacctg
cagaagggagagaatcccagccagtatggaatcactgctttcaatcaccccctgaatctc
accaagcagcagctctcggaggtggctttgatgaccacgtcagtggatgtccttgtgtcc
atctgtgtcatctttgcgatgtcttttgttccagccagctttgttgtgttcctaattcag
gagcgggtcagcaaagcaaagcatctgcagttcatcagtggggtgaagcctgtcatttac
tggctctccaattttgtctgggatatgtgcaattatgtggtccctgctacactggtcgtt
atcatctttatctgcttccagcagaagtcctatgtgtcctccaccaacctgcctgtgcta
gcccttctacttttgctatatgggtggtccatcacaccgctcatgtacccagcctccttt
gtgttcaagatccctagcacggcctacgtggtactcaccagtgtgaatctcttcatcggc
atcaatggcagtgtggccacttttgtgctggagctcttcaccaacaacaagctgaataac
atcaacgacatcttgaagtctgtgttcttgatctttccccacttctgcctgggacgaggg
ctcattgacatggtgaaaaaccaagcaatggctgacgctctggaaaggttcggagaagat
cgatttgtgtcaccactctcctgggatttggtggggcgaaaccttttcgccatggctgtg
gaaggagtagtgtttttcctcattactgttctgatccagtacagattcttcatcaggcca
agacctgtgaaggcaaagcttcctcctttgaatgatgaggatgaagatgtaaggcgggaa
agacagagaatcctggatggtggaggacagaatgatattttggaaatcaaggagctgact
aagatatacagaaggaagaggaagccagctgtggacaggatttgtgtcggcattcctcct
ggagagtgctttggactcctgggagtgaatggtgctgggaaatcatcaactttcaagatg
ttgactggagacaccaccgttactgggggtgatgcttttcttaacaaacacagcatctta
tcaagtatccatgaagtacatcagaacatgggctactgccctcagttcgatgccatcaca
gagctgctgactgggagagaacatgtggagttctttgctctcttgagaggagtcccagag
aaagaagttggcaaggttggtgaatgggcaattcggaaactgggccttgtgaagtatgga
gaaaagtatgctggaaactacagtggaggcaacaagcgaaaactttccacagccatggct
ttgatcggtgggccccctgtggtctttctggatgagccaaccacaggcatggatcccaaa
gcccgaagattcttgtggaattgtgccctcagcatcgtcaaggaagggagatcagtggtg
cttacatctcacagtatggaagaatgcgaagccctttgcactaggatggcaatcatggtc
aatgggaggttcagatgccttggcagtgtccaacatctgaaaaatagatttggagatggt
tatacaatagttgtgcgaatagcaggggccaaccctgacctgaagcctgtccaggagttt
tttggacttgcctttcctggaagtgtcctaaaggagaaacaccggaacatgctccagtac
cagcttccatcttcattatcttctctggccaggatattcagcatcctctcccagagcaaa
aagcgactccacatagaagactactctgtttcccaaacaacacttgaccaagtatttgtg
aattttgccaaggaccaaagtgatgatgaccacttaaaggacctctcattgcacaaaaac
cagacagtggtagatgtggcagtgctcacatcttttctgcaggatgagaaagtgaaagaa
agttacgtatga
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integrated database retrieval system
