Perognathus longimembris pacificus (Pacific pocket mouse): 125346274
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Entry
125346274 CDS
T08928
Symbol
Btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125346274 (Btaf1)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
125346274 (Btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
HEAT_MROH2B_C
TOR1L1_N
Vac14_Fab1_bd
HEAT_GCN1
HEAT_2
HEAT_GCN1_C
TPR_Trm732_C
HEAT_GCN1_C_2
ARM_ECM29
UTP20
Cnd1
ARM_TBCD_2nd
Spe-44
Rac1
Motif
Other DBs
NCBI-GeneID:
125346274
NCBI-ProteinID:
XP_048194650
LinkDB
All DBs
Position
2:complement(29128477..29213068)
Genome browser
AA seq
1849 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRI
AAGQAVEAIVKNVPEWNPVPRTKQESTSESSMEDSSTTDRLNFDRFDICRLLQHGASLLG
SAGAEFEVQDEKSGEVDHKERIARQRKLLQKKLGLNMGEAIGMSTEELFNDEDLDYTPTS
AALVNKQPTLQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVEANEKSNDSTDG
EPEEKRRKIANVVINQTTNDSKVLIDNIPDTSSLIEETNEWPLESFCEELCNDLFNPSWE
VRHGAGTGLREILKAHGKSGGKMGDSTLEEMIQQHQEWLEDLVIRLLCVFALDRFGDFVS
DEVVAPVRETCAQTLGVVLKHMNETGVHKTVDVLLKLLTQDQWEVRHGGLLGIKYALAVR
QDVINTLLPKVLTRIIEGLQDLDDDVRAVAAASLVPVVESLVYLQTQKVPSIINTLWDAL
LELDDLTASTNSIMTLLSSLLTYPQVQQCSIQQSLTVLVPRVWPFLHHTISSVRRAALET
LFTLLSTQDQNSSSWLIPILSDMLRHIFQFCVLESSQEILDLIHKVWMELLSKASVQYVV
AAACPWMGAWLCLMMQPSHLPIDLNMLLEVKARAKEKTGGKVRQGQSQNKEVLQEYIAGA
DTVMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNMVTQEIKPAESLGQLLLFHLNS
KSALQRISVALVICEWATLQKECKAVTLAVQPRLLDILSEHLYYDEIAVPFTRMQNECKQ
FISSLADAHIEVGNRINNNVLTIDQANDLVTTVFNEVTSTFDLNPQVLQQLDSKRQQVQM
TVTETNQEWQVLQLRVHTFAACAVVSLQQLPDKLNPVIKPLMETIKKEENTLVQNYAAQC
IAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPCVTCPVPTQSGQENSKGPNSEKDGM
HHTVTKHRGIITLYRHQKAAFAITSRRGPTPKAVKAQIADFPAGSSGNILVELDEAQKPY
LVQRRGAEFALTTIVKHFGGEMAVKLPHLWDSMVGPLRNTIDLKNFDGKSLLEKGDGPAQ
ELVNSLQVFETAAASMDSELHPLLVQHLPHLYMCLQYPSTAVRHMAARGVGVMSKIATME
TMNIFLEKVLPWLGAIDDNVKQEGAIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTD
SVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIQMKAKERHFLEQLLDGKKLENYKIPV
PINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCQRAQEYARSK
LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIV
ASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNV
LELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFL
LRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKP
KLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNSSLHDIQHAPKLSALK
QLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGS
IPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA
HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTL
DKDGKAEKADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctccaggcttgaccgtctttttatcttactggatactggcactactccagtt
acaaggaaagctgctgcacaacaacttggagaagtggtgaagcttcatcctcatgaacta
aataatctgttatctaaagtattaatttatttaagaagtgcaaattgggatacccggatt
gctgcaggacaagctgttgaagctatagtgaaaaatgtgcctgagtggaatccagtgcca
agaaccaaacaagaatctacttcagaaagttctatggaagattcatccactacagatcga
ttaaattttgacaggtttgatatatgtagattgttacagcatggtgcatcgcttttggga
tctgctggtgcagaatttgaggtccaagatgaaaaatcaggtgaagtggatcataaagag
aggatagcacgccaacggaaactattacagaagaaacttggtctcaatatgggagaagcc
attggaatgagtactgaagaactctttaatgatgaagatttggattataccccaacttca
gcagcccttgtaaacaaacaacctactctccaggcagctgaattgattgactcagaattc
cgagcaggaatgagcaacaggcaaaagaacaaagctaaacgaatggctaagttatttgca
aaacagaggtccagggatgcagtggaagctaatgagaagagtaatgatagcactgatggg
gagccagaagaaaagagacggaaaatagcaaatgttgttattaatcagacaacaaatgat
tctaaagtcttgattgataatattccagacacttcttccttaattgaagagacaaatgaa
tggcctttggaaagtttttgtgaagaactttgcaatgatctttttaatccttcttgggag
gttcgacatggggcaggcactggacttagggaaattcttaaagctcatggaaaaagtggt
ggtaaaatgggagatagcactttagaagagatgattcagcagcatcaagagtggttggaa
gacttggttattagactcctttgtgttttcgcattagacagatttggagactttgtttct
gatgaggttgtggcaccagttcgtgaaacctgtgctcaaacgttaggtgtggttttaaaa
cacatgaatgaaacaggagttcataagactgtagatgtattgctaaaattacttacacaa
gatcagtgggaagtcagacatggtggtctgctgggaattaaatatgcattggcagtacgt
caggatgtgattaatactttattacctaaagttttaactagaataattgaaggacttcaa
gatcttgatgatgatgtcagagctgttgctgcagcatcattagtgcctgttgtagaaagc
ttggtctatctccagacacaaaaggtaccctctattataaataccttatgggatgctctt
ctggaattagatgatctgacagcttcaacaaatagtattatgactcttctttcatcgttg
ttaacttatcctcaggtccaacaatgcagtattcaacagtcactcacagttttagttcca
cgtgtctggccatttttacatcacactatatcatcagttcgaagagcagcattggaaact
ctgtttacgttattatcaacacaggatcagaattcttcatcttggcttatacctatcctg
tctgatatgcttcgacacatttttcagttttgtgttttagaaagcagtcaggaaattctg
gaccttattcacaaggtttggatggaactgttgagcaaggcctcagttcagtatgtggta
gcagctgcttgtccatggatgggtgcttggctttgcttaatgatgcagccttctcattta
cctattgatttgaatatgttgctagaagtaaaagctagagccaaggaaaaaacaggtggc
aaagtacgccaaggacaaagccagaataaagaagtacttcaggagtatattgcaggtgca
gacaccgtaatggaagatccagccaccagggattttgtagttatgagggcaagaatgatg
gcagccaagttgttaggagcactttgttgctgtatttgtgacccaggtgtaaatatggta
acccaagaaattaaaccagcagaatcccttggccagttactgctcttccatttgaactcc
aaatctgccttacagaggattagtgttgctttggtcatctgtgaatgggctactttacaa
aaggagtgtaaagctgttaccctagctgtgcagccacgtttacttgatatcctttcagaa
catttatattatgatgaaattgctgttccattcacacgaatgcagaatgaatgtaaacag
tttatatcatcattagctgatgcacatattgaagttggtaatagaataaacaacaatgtt
ttaacaatagatcaagctaatgacctggtcaccactgtttttaatgaagtcacatcaacc
tttgatttaaatcctcaagtgttacagcagttagatagtaagcgacaacaggtccaaatg
acagttacagagactaaccaagagtggcaagtgctgcagttgcgtgtgcatacttttgct
gcatgtgcagttgtgagcttgcagcagcttccagataaattaaatcctgtcataaaacca
ctcatggagacaattaaaaaagaagagaatacactagtgcaaaactacgcagctcagtgc
atagctaaacttcttcagcagtgcacaacaaggactccctgccccaattcgaaaattatt
aaaaacctctgtagttcactttgtgtggatccatacctaactccttgtgtaacgtgtcct
gtaccaacacaaagtggccaggaaaattctaaaggacccaactcagaaaaagatggaatg
catcataccgtcaccaagcacagaggtataattacactgtacaggcaccagaaagctgct
tttgctatcaccagtaggcgaggtcctacccccaaagcagtaaaagctcaaatagcggat
tttcctgcaggaagtagtgggaatatccttgttgaacttgatgaggcccagaagccttac
ctggtccaacgaagaggagctgaatttgccttgacaactatagtgaaacattttggtggg
gaaatggcagtgaagttgcctcatctctgggatagtatggttggcccgttgaggaataca
attgacctaaaaaattttgatggaaagtccctcctggaaaagggagatggccctgcccaa
gagctggtgaattctctgcaagtttttgaaacagcagcagcttcaatggattctgaactt
catcccttgctggtgcagcatttgcctcatctttatatgtgcctgcagtaccccagcacc
gctgtgaggcacatggctgctcgcggtgtcggagtcatgagtaaaatagctaccatggaa
acaatgaacatctttttggagaaggttcttccgtggctaggagcaattgatgataatgtc
aaacaagagggtgcaatcgaagcacttgcctgtgtaatggaacaactggacgttggtatt
gttccatacattgtccttttagttgttcctgtgttgggaagaatgagtgaccagacagac
agtgtaagatttatggccacccaatgttttgcaacactaattaggctcatgccacttgag
gcaggcattccagatcctccaaacatgtcagaagaactaatccaaatgaaagcgaaagag
cgacactttttggaacaactgttagatggaaaaaaattagaaaactacaaaattccagta
ccaattaatgctgaactacggaaatatcagcaggatggtgtgaactggttagcatttctt
aacaagtataaacttcatggaattttgtgtgatgacatgggcctaggaaaaactttacag
tccatctgcattctagcaggcgatcactgtcagagggcccaggaatatgcacgatcaaaa
ttggcagagtgtatgccgcttccttctttggtggtttgtccaccaacattaacaggtcac
tgggtggatgaagtgggtaaattttgttccagagagtatcttaatccattgcactatact
ggacctcccactgaaagaataaggttgcagcatcaagttaaaaggcataatctgatagtg
gcttcatatgatgttgtgaggaatgacatcgatttttttagaaatattaaattcaactac
tgtattctcgatgaaggtcatgtcattaaaaatggaaaaacaaaattatcgaaagcagta
aaacaactgactgccaattataggattattctttctggaacaccaatccagaacaatgtt
ctggagctgtggtcattatttgatttcctcatgccaggatttttgggtaccgaacgccag
tttgctgctcgatatggcaaacctatattagcaagtagggatgctcgaagttccagccga
gaacaagaagcaggtgttcttgcaatggatgcactgcaccgccaggtcctgccatttctt
ttgaggagaatgaaagaagatgttttacaggaccttccacctaaaattattcaagactat
tattgtactctcagtcctctccaggttcagctttatgaagattttgctaagtctcgtgcc
aagtgtgatgttgatgagactgtttcttcagctgcactttctgaagaaaccgaaaaacca
aagcttaaagctacaggtcatgtattccaggcattacagtacttacgtaaactgtgcaac
catccagcattagtcttaacacctcagcatccagagttcaaaagtactactgaaaaacta
gcagttcagaattcttctcttcatgatattcaacatgctcctaaactttcagctttgaaa
caactgctattggactgtggtttgggaaatggcagcacttcagagagtggcacagagtct
gttgtggcccagcacagaatactgatcttctgtcagcttaaaagcatgcttgatatagta
gaacatgatctgctcaaacctcacttgccctctgtcacttatttgagattagatggcagc
atacctcctggtcagaggcattcaattgtttcccggtttaacaatgatccatccatagat
gttctgttacttacaactcacgttggtggcctggggcttaacttgacaggcgctgacact
gtggtatttgtggagcatgactggaatcctatgcgtgacctccaagccatggaccgggcc
catcgaattgggcagaaacgcgtggttaatgtttaccgattgataaccagaggaacattg
gaagaaaaaataatgggtttgcagaaattcaagatgaacatagcaaatactgttattagc
caagagaattcaagtctgcagagtatgggaacagatcaacttcttgatctatttactctt
gataaggatggcaaagcagaaaaagcagacacttcaacttctggaaaagcaagtatgaaa
tcaattcttgaaaatctgagtgatctttgggatcaagagcaatatgattcagaatatagc
ctggaaaattttatgcattctctcaagtaa
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integrated database retrieval system
