Perognathus longimembris pacificus (Pacific pocket mouse): 125346378
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Entry
125346378 CDS
T08928
Symbol
Herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125346378 (Herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125346378 (Herc4)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125346378 (Herc4)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
HECT type E3
125346378 (Herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
125346378
NCBI-ProteinID:
XP_048194828
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All DBs
Position
2:complement(43667542..43758370)
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AA seq
1057 aa
AA seq
DB search
MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFVNKKIRDVGCGLRHTVFVLDDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLG
SEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTS
PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLR
SQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIA
CGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPSDIDSQE
YFCVKRIFSGGDQSFSHYSSLQNSGPPDDFRYPDPSKQIWTVNETLIQKWLSYPSGRFPV
EIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTKFSGVDMNAARLLFHKLIQPDHPQISQ
QVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAP
LKVLENWWSILEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNNFLHTALKVLEIL
HRVNEKTGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMDVSHGLTELADIPVTICT
YPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVG
DAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSR
LIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKKKPSLDDLKELMPD
VGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAY
VDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKG
EYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGEDYLP
VSHTCFNLLDLPKYTEKETLRSKLIQAIDHNEGFSLI
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgctggggaaatgcatcttttggacaactaggtttgggtggaattgatgaagaa
attgtactagagccccgaaaaagtgacttttttgtaaataaaaaaatccgagatgtagga
tgtggactcagacataccgtctttgttctggacgatggaactgtatacacatgtggatgt
aatgatctaggacagctaggtcatgaaaaatccaggaagaaaccagagcaggttgttgcc
ctggatgcccaaaatatcgtagctgtttcatgtggagaagcccatacattagcgcttaat
gacaaaggccaggtgtatgcttggggtctcgattctgatggacaacttggcctactagga
tcagaggaatgtatcagagtacccagaaatattaagagtttgtcagatatccagattgtg
caggttgcttgtggttactatcattcccttgcgctttctaaagcaagtgaagttttctgt
tggggacagaataaatatggccagttgggtttaggcattgactgtaaaaaacaaacttca
ccacagctgcttaagtctttgcttggaatcccgttcatgcaagtcgcagcaggaggtgcc
catagttttgtactcaccctttctggagctatctttggatggggacgcaacaaatttggt
caactaggtcttaatgatgaaaatgataggtatgttcctaatttactaaagtcattaaga
tctcagaaaatagtttatatttgttgtggagaagatcacactgctgcattaaccaaggaa
ggtggagtgtttacttttggagctggagggtatggccagttgggtcataactctaccagt
catgaaataaacccaaggaaagtttttgaacttatgggaagtattgttacacagattgct
tgcggaaggcagcatacctctgcatttgtaccttcatcaggacgaatttactcttttggg
cttggtggtaatgggcagttgggaactgggtcaacaagcaacagaaagagtcctttcact
gtaaaaggaaattggtttccttataatggtcaatgtccatcagatattgattctcaagaa
tatttctgtgtaaaaagaattttctctggtggagaccaaagcttttcacattactctagc
cttcagaactctgggccacctgatgactttagatatcctgatccttcaaagcagatctgg
acagtgaatgaaactcttattcagaaatggctaagctacccctctggaaggtttcctgtg
gagatagccaatgagatagatggaacgttttcctcatctggttgcctaaatggaagtttt
ttagctgttagcaatgatgatcactatagaacaggcaccaaattttcaggagttgatatg
aatgctgctaggcttttattccacaaacttatacaacctgatcatcctcagatatctcag
caggttgcagctagtttggaaaagaatcttatacctaaattgactagctccttacctgat
gttgaagcattgaggttttatcttactctgccagaatgtcccctgatgagtgattccaac
aatttcacaacaatagcaattccctttggtacagctcttgtgaacctagaaaaggcacca
ttaaaagttctcgaaaactggtggtcaatacttgaacctccactgttcctcaagatagta
gaactttttaaggaagttgtggtacatcttttgaaactctacaagattggaattccccct
tctgaaagaagaattttcaacaatttccttcatactgcattaaaggttttagaaatacta
catagggtaaatgagaaaacaggacagattatacaatatgataaattttatatacatgaa
gtacaagaactgatagacataaggaatgattacatcaactgggtccaacagcaggcctat
ggaatggatgtcagccatggattaactgagttggcagatatccctgttacaatctgtacg
tatccatttgtatttgatgcccaagcaaaaactaccttgttacaaacagatgcagtctta
cagatgcagatggctattgaccaggcccacagacagaacgtctcctctctctttctccca
gtgattgaatctgtgaatccctgcctaattctagtggttcgtagagaaaatattgtggga
gatgcaatggaagttcttaggaaaacaaagaacatagattataagaagccactcaaggtt
atatttgttggagaagatgctgttgatgcaggaggagtacgcaaagaatttttcttgctc
atcatgagggaattattggatcctaaatatggcatgtttagatattatgaagattccagg
ctcatttggttttcagataagacatttgaagatagtgatttgttccatctgattggtgtt
atctgtgggttagcaatttacaattttacaattgtggaccttcactttcctttggcttta
tataagaaactcctgaaaaagaagccatccttggatgatttgaaagaactaatgcctgat
gttgggagaagcatgcaacaattactggattatccagaagatgatatagaggaaacattt
tgtctaaattttacgatcacagttgaaaacttcggtgcaacagaagtgaaagagctggtt
ctaaatggtgcagatacagctgttaacaaacaaaatcggcaggaatttgttgatgcttat
gtggattacatattcaataaatcagtagcttccttatttgatgcttttcatgccggcttt
cataaggtctgtggaggaaaagttcttctactcttccagcctaatgaactacaagcaatg
gttattggaaatacaaattatgactggaaggaactggaaaagaatacagaatacaaaggg
gagtattgggcagaacatcctacgattaaaattttttgggaagtattccatgaattacct
ttggaaaagaaaaagcaatttctattatttttgacaggtagtgatcgcattccgattctt
ggtatgaagagcctgaaactagtcatccagtcaacaggaggcggtgaggactatctcccg
gtttcccatacttgctttaatcttctagatcttccaaaatacacagaaaaagaaactcta
cgctctaaactgatccaagctattgatcacaatgaaggcttcagtttaatataa
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