Perognathus longimembris pacificus (Pacific pocket mouse): 125346479
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Entry
125346479 CDS
T08928
Symbol
Vcl
Name
(RefSeq) vinculin isoform X1
KO
K05700
vinculin
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04510
Focal adhesion
plop04520
Adherens junction
plop04670
Leukocyte transendothelial migration
plop04810
Regulation of actin cytoskeleton
plop04820
Cytoskeleton in muscle cells
plop05100
Bacterial invasion of epithelial cells
plop05146
Amoebiasis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125346479 (Vcl)
04520 Adherens junction
125346479 (Vcl)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125346479 (Vcl)
04810 Regulation of actin cytoskeleton
125346479 (Vcl)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
125346479 (Vcl)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125346479 (Vcl)
09174 Infectious disease: parasitic
05146 Amoebiasis
125346479 (Vcl)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
plop04812
]
125346479 (Vcl)
04147 Exosome [BR:
plop04147
]
125346479 (Vcl)
Cytoskeleton proteins [BR:
plop04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
125346479 (Vcl)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125346479 (Vcl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
Talin_IBS2B
SelB_WH_2nd_bact
VMAP-M0
Motif
Other DBs
NCBI-GeneID:
125346479
NCBI-ProteinID:
XP_048195045
LinkDB
All DBs
Position
2:48806700..48904848
Genome browser
AA seq
1066 aa
AA seq
DB search
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAE
INEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPNANAGDAGEQAIR
QILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGL
DVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAE
LCDDPKERDDILRSLGEIAALTSKLADLRRQGKGDSPEARALAKQVATALQNLQTKTNRA
VANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQD
LLAKCDRVDQLTAQLAELAARGEGESPQARALASQLQDSLKDLKAQMQEAMTQEVSDVFS
DTTTPIKLLAVAATAPPDTPNREEVFDERAANFENHSGRLGATAEKAAAVGTANKSTVEG
IQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTK
SLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR
EAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP
DFPPPPPDLEQLRLTDDLAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMM
AARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDE
VTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQAT
EMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgtttcatacacgcacgattgagagcatcttggagccggtggcgcagcagatc
tcacacctggtgattatgcacgaggagggcgaggtggacggaaaagccattccagacctc
acggcgcccgtggctgctgtgcaagcggcggtcagcaacctggtccgggttggaaaagag
actgttcaaaccaccgaggatcagattttgaagagagatatgccaccagcatttataaag
gttgagaatgcttgcaccaagcttgttcaggcagcacagatgcttcagtcagacccttac
tcggtgcctgctcgagattatctcatcgatgggtcaaggggcatcctctctggcacatca
gacctgcttcttacctttgatgaggctgaggttcgtaaaatcattcgcgtttgcaaaggc
atcttggaatatcttacggtggcagaggtagtagagactatggaagatttggtcacttat
acaaagaatctggggccaggaatgactaagatggccaagatgattgatgagagacagcag
gagctgactcaccaggagcaccgagtgatgttggtgaactcgatgaataccgtgaaagag
ttgcttccagttctcatttcagccatgaagatttttgtaacaactaaaaactcaaaaaac
caaggaatagaagaagctttgaaaaatcgcaattttactgtagaaaagatgagtgctgaa
attaatgagatcattcgtgtcttacaactcacctcctgggatgaagatgcctgggccagc
aaggatactgaagccatgaagagagcactagcctccatagactccaaactgaaccaggcc
aaaggttggctccgggaccccaatgccaatgcaggggatgctggtgagcaggccatcagg
cagatcttagatgaagctggcaaagttggtgaactttgtgcaggcaaggaacgcagggag
atcctgggaacctgcaagatgctggggcagatgactgatcaagtggctgacctccgagcc
agaggacaaggagcctcacctgtggccatgcagaaagcccagcaggtatctcaaggactg
gatgtgctcacagcgaaggtggaaaatgcagctcgcaagctggaagccatgacaaactca
aagcagagtattgcgaagaagattgatgctgctcagaattggcttgcagatccgaatggt
gggcctgaaggggaagaacagattcgaggggctttggctgaagctcggaaaatagcagaa
ttgtgtgatgatccaaaagagagagatgacattctgcgttcccttggagaaatagctgct
ctgacttctaaattagctgatttgcgaagacagggtaaaggagattccccagaggctcga
gcactggccaaacaggtagctaccgccttgcagaacctgcagaccaaaaccaacagggct
gtggccaacagcagacctgctaaggcagctgtccacctggagggcaagattgagcaagct
cagcggtggattgacaatcccacagtggacgaccggggagttggtcaggctgccatccgg
gggcttgtagctgaaggacatcgtctggctaatgttatgatgggaccttatcgccaagat
cttctggcgaagtgtgaccgtgtggatcagctgacagctcagctggctgaactggctgcc
cgaggggaaggggaaagtcctcaggcccgagcacttgcatcacagcttcaagactcctta
aaggatctgaaagcccagatgcaggaagccatgactcaggaggtgtctgatgtgttcagc
gataccacgactcccatcaagctgttggcagtggcagccactgcccctcctgatactccc
aatagggaagaggtatttgatgagagagcagcgaactttgagaaccattcaggaaggctt
ggagccacagcagaaaaggcggctgccgttggtactgctaataagtcaactgtggaaggc
attcaggcgtcagtgaagacagcccgagaactcacaccccaggttgtatctgctgctcgc
atattacttaggaaccctggaaatcaagctgcttatgaacattttgagactatgaagaac
caatggattgacaatgttgaaaaaatgacaggcctggtggacgaagcgattgataccaag
tctctcttggatgcttctgaagaagcaatcaaaaaggacctggacaagtgtaaggtagcc
atggccaacattcagccgcagatgctggtcgctggagcaaccagtattgctcgtcgggcc
aaccgaatcctgctggttgctaagagagaggtggagaactctgaggaccccaagttccgt
gaggctgtcaaagctgcctctgatgagctgagcaaaacaatctccccgatggtgatggac
gcaaaggctgtagctggaaacatctctgaccctggcctgcaaaagagcttcctggactca
ggatatcggatcctgggagctgtggccaaagtcagagaagctttccaacctcaggagcct
gacttcccgccgcctccaccagaccttgaacagctccgtctaacagatgatcttgctcct
cccaaaccaccactgcctgagggtgaggtccctccacccaggcccccaccacccgaggaa
aaggatgaggagttccctgaacagaaagccggggaggtgattaaccagccaatgatgatg
gctgccaggcagctccatgatgaagctcgcaagtggtctagcaagggcaatgacatcatt
gcagcagccaagcgcatggctctactgatggctgagatgtctcggttggtaagagggggc
agtggtaccaagagggcactcatccaatgtgccaaggacatcgccaaggcctcagatgag
gtcactcggttggccaaggaggttgccaaacagtgcacagacaagcggattagaaccaat
ctcttacaggtatgtgaacggatcccaactataagtacgcagctgaaaatcctgtccaca
gtgaaggccaccatgctgggccggaccaatatcagtgatgaggagtctgagcaggccaca
gagatgctggttcacaatgcccagaacctcatgcaatctgtgaaggagactgtgcgagag
gcagaggctgcttcaatcaaaatccgaacagatgctggatttacactgcgctgggtcaga
aagactccctggtaccagtag
DBGET
integrated database retrieval system
