Perognathus longimembris pacificus (Pacific pocket mouse): 125346556
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Entry
125346556 CDS
T08928
Symbol
Ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125346556 (Ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125346556 (Ercc6)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125346556 (Ercc6)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125346556 (Ercc6)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
125346556 (Ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
125346556
NCBI-ProteinID:
XP_048195180
LinkDB
All DBs
Position
2:complement(60548770..60632419)
Genome browser
AA seq
1465 aa
AA seq
DB search
MPHEEIPHSSQAQEQDDFQSYHVSASKETSTEPENGGNGVAEECLPSPSSDDGLPTPAEA
CASVVGRRGPGLLHINRHQIPAVEPSAQALELQGLGVDVYDQAVLEQGVLQQVDSAMHEA
SRATQLADAEKEYQSVLDDFTSCMKSLRHIDKIIEQLSPQAPTSRDISRKLESVKRQKYN
KEQQIKKITAKQKRLQAILRGAEVQVELEHASLEEDAEPGPSCLGSMLMPAQETAWDELI
RTGQMTPFGTQVPQKQEKKPRKIMLNEASGFEKYLADQAKLSFERKKQATNKRVTRKALV
ACESNTGPNENRPSQGNKLVSRTDQRLKKHMRKLQRQALQFQGKVQLQKGQKFPEPQGGP
ETEGDSEGEECGSFPTEEEMEEEEEEEEDDRAGADFSGDGTDYELKPLCKGRKRQKKAPA
QEVDDDFFPSSGEEAEATGEGGRGGGRKEKCRDDGDEDYYKQRLRRWNKVRLQDKVQCLN
LDDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQ
IIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETG
SYTHKKEKLVRDIAHCHGILITSYSYIRLMQDAISRYDWHYVILDEGHKIRNPNAAVTLA
CKQFRTPHRIILSGSPMQNNLRELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASP
VQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHEVYQNFID
SKEVYGILNGDMQIFSGLVALRKICNHPDLFSGGPKNLRGHTDDELEENQFGYWKRSGKM
IVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFLRAQNYSYLKMDGSTTIASRQPLIAKY
NEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYR
LLMAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDISQSTETSAI
FAGTGSDVKTPARRFRKKVAPALGTDHTIPNCMKFPDSNTSAEGATLTEAEPKAMGVVGC
NDSGTLPSGGRSSAGCEGEAGRESGPEGLPVASVNGDCSNLPRVGGTRKEGPSCEGKICP
LQTGPLWENGRVESHFHKHKSKTKHQDVAGEAMSGKPLKAKCRRDAKFEGTRVPHLVRKR
QYNKQDSEQESQAREQNSDDYVLEKLFKKSVGVHSVVKHDAIVDGASPDYVLVEAEANRV
AQEALRALKLSRQRCLGATSGVPTWTGHRGTSGAPSGVKSRFGQKRNSNLTVQPLSSISP
TQKCQDGTLKKEGKDGAPEHFSGKAEEAESSSRVPASSLLLARMRARNHLILPERLESNS
GLLPEASAPPPAATEHDDLLVEIRNFIAFQAHVDGQASTREILQEFESKLSTSQSCVFRE
LLRNLCTFHRTSGGEGIWKLKPEFC
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgccccatgaggaaatccctcactcaagtcaagcacaggagcaagatgactttcaaagt
taccatgtcagtgctagtaaagaaacgtcaactgagccagaaaatggtgggaacggggtg
gcagaagagtgcctcccctctccttcctctgacgatggtcttcccaccccagccgaggcc
tgtgcatcagtggttgggaggagaggtcctggcctgctgcatatcaacagacatcagatt
ccagcagtggagcctagtgcacaggccctggagctacagggcctgggagtggatgtctat
gaccaggctgtgttagagcagggtgtgcttcagcaggtggacagtgcaatgcatgaggcc
agtcgtgccacccagcttgctgatgctgaaaaggagtaccagtcagtcctggatgacttc
acgtcatgtatgaagtccttaaggcatatcgataaaattattgaacaacttagccctcaa
gctcccaccagcagagacatcagcaggaaattagagtctgtaaagcggcagaagtataat
aaggaacagcagataaagaagatcactgcaaagcagaaacgtctgcaggccattctcaga
ggagcagaggtacaagtagagttggaacacgccagcctggaggaggatgcagagccaggg
ccctcctgtttgggcagtatgctcatgcctgctcaggaaaccgcttgggacgagctcatc
cgcactggtcagatgacaccatttggaacccaggtccctcaaaaacaggagaaaaagcct
agaaaaataatgctcaatgaggcatcgggctttgaaaaatatctggctgatcaagcaaag
ctgtcttttgaaaggaagaagcaagctaccaataagagagtaaccagaaaagccctggtt
gcctgtgagtccaacacaggaccaaatgaaaacagaccaagccaggggaacaaacttgtc
tcaagaacagaccaacgcttgaagaagcacatgaggaagctgcagagacaggcactgcag
ttccagggcaaagtgcagttgcaaaaggggcagaagttcccggagccccagggagggcca
gaaacagaaggagactctgagggtgaggagtgtggctccttccccacagaggaggagatg
gaggaggaagaggaggaggaggaagatgacagggcaggggctgatttttctggagatggc
acagattatgaactgaagcctctatgcaagggccgaaaacgccagaaaaaagcccctgca
caggaagttgatgatgactttttcccaagttcgggggaagaagctgaagccacaggggaa
ggaggaagaggaggaggtcgcaaagagaagtgccgagatgatggggatgaagattattac
aagcagcggttaaggaggtggaataaagtgagactgcaagacaaagtgcaatgcctaaac
ctggatgatgattctgaggaaagtgatgctgaatttgatgaaggttttaaagtgccaggt
tttctgttcaaaaagctctttaagtaccagcagacaggtgttaggtggctgtgggaattg
cactgccagcaggcaggaggaattctgggagatgaaatgggattgggcaagaccatccag
ataattgccttcttggcaggtctgagctacagcaagatcaggactcgtggttcaaattac
aggttcgaggggttaggccccaccgtaattgtctgtccaacaacagtgatgcatcagtgg
gtgaaagaattccacacgtggtggcctccattcagagtggcaattctgcacgaaaccggc
tcctacacccacaaaaaggagaagctagttcgagatattgctcattgccatggaattttg
atcacttcttactcctacattcgactgatgcaagatgccattagcaggtatgactggcac
tatgtgatcttagatgaaggacacaaaattcgaaacccaaatgctgctgtcaccctcgct
tgcaaacagttccgtacaccccatcggatcattctgtctggctcaccgatgcagaataac
ctccgagagttgtggtcgctcttcgactttgtcttcccaggaaagctgggcacgctgcct
gtgttcatggagcagttctccgttcccatcactatgggaggatattctaacgcttctcct
gtccaggttaaaactgcctataagtgtgcatgtgttctacgggacaccataaacccatac
ctgctgcggagaatgaagtcagatgtcaagatgagcctttctttgcctgataaaaatgaa
caggtcttattttgtcgtcttactgatgagcaacatgaagtttaccagaatttcattgat
tccaaagaagtttatgggattctcaatggagacatgcagattttctctggacttgtagcc
ctaagaaaaatctgcaaccaccctgatctcttttctggaggtcccaagaatcttagaggt
catacagatgatgaactagaagaaaatcagtttgggtactggaaacgttctgggaaaatg
attgtggttgagtctttgttgaaaatatggcacaagcagggtcagcgagtgctgctgttt
tctcaatcaagacagatgctacacatccttgaagtgttcctgagagcccagaattactcc
tatctcaaaatggatgggagcactaccatagcttcgcggcaacctctgattgcaaaatac
aatgaggatgcatccatctttgtgtttcttctgaccacgagggtgggtggcctgggagtc
aacctgactggggccaacagagtcatcatctacgaccccgactggaaccccagcaccgac
acacaggcccgggagcgagcgtggaggataggccagaagaagcaggtgactgtgtacagg
cttctgatggccggaaccattgaggagaagatttaccaccgacaaatcttcaagcagttt
ctgacaaaccgagtgctaaaagatccaaaacaaaggcggtttttcaaatccaatgatctt
tatgagctgttcactctgacgagccctgacataagccagagcaccgaaacaagtgcaatt
tttgcaggaactggatcagatgtgaagacacccgctcgccgttttagaaaaaaagtcgca
ccagcccttggaacagaccacaccattccaaactgcatgaagtttccagattctaacaca
tctgctgagggggccacactgactgaggcggagcccaaggccatgggagtggtagggtgt
aacgacagtggcaccctaccctctggtggcagaagcagtgctgggtgcgaaggagaagca
ggcagggagtctggacctgaggggctaccggtggccagtgtaaatggtgactgctcaaac
ttgcccagagtgggtgggaccaggaaggaggggccatcctgtgaaggaaagatctgtcca
ctgcagacaggacccctttgggagaatggacgagtggaaagtcattttcataagcacaag
tcaaaaacaaaacatcaagatgtggcaggtgaagcgatgtcagggaaacctctgaaggcc
aagtgccgtagagatgccaagtttgagggaacccgtgttccacatttggtgaggaagagg
cagtacaacaagcaagactctgagcaggagagccaggccagagaacaaaacagtgatgat
tatgttttagaaaagcttttcaaaaagtcagtgggcgtgcacagtgtggtgaagcacgat
gccatcgtggacggggccagcccagactatgtgctggtggaggcagaagccaaccgagtg
gcccaggaggccctgagagccctgaagctctcacgtcagcgatgtctgggggctacgtct
ggtgttcccacctggactggccacagggggacttctggcgcaccttcaggagtaaagagc
agatttggtcagaaaaggaactctaacttaactgtgcagccactttcttcaatatctcca
acacaaaaatgccaggatggcaccttgaagaaggaggggaaagatggtgccccagagcac
ttcagtggcaaagcagaagaggcagagtcttcctctagggtccctgcttcttccttactc
ttggccaggatgagagcaagaaaccacctgattctgccagagcgattggagagcaacagt
ggactccttccagaggcttctgccccaccacctgctgccacagaacacgatgacctactg
gtagagataaggaacttcattgcttttcaggcccatgtggatggccaggctagcactcgg
gagatactacaggagttcgaatccaagctgtccacctcgcagtcttgtgtcttccgggag
cttctgagaaatctgtgcacttttcatagaacttccggtggagaagggatttggaaactg
aaaccagagttctgctga
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integrated database retrieval system
