Perognathus longimembris pacificus (Pacific pocket mouse): 125346695
Help
Entry
125346695 CDS
T08928
Symbol
Prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125346695 (Prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125346695 (Prpf4)
Spliceosome [BR:
plop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
125346695 (Prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
125346695
NCBI-ProteinID:
XP_048195410
LinkDB
All DBs
Position
1:144180641..144194311
Genome browser
AA seq
521 aa
AA seq
DB search
MASSRASSTATKTKAADDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA
DGSVKLWSLESDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctctcgggcctcctccacggcaaccaaaactaaagctgctgatgacttagtc
gctcctgttgtgaagaaaccacatatctattatggaagtttggaagagaaggaaagggaa
cgtctggccaaaggagagtctgggattttgggaaaagaaggacttaaagcaggaattgaa
gcaggaaatattaatataacctctggagaagtatttgaaattgaagagcacatcagtgag
cggcaggcggaagtattggccgagtttgagagaaggaagcgtgcccggcaaatcaatgtt
tccacagatgactcagaggtcaaggcttgccttagagccttgggggaacccatcacactt
tttggagaggggcctgctgaaaggagagaaaggttaagaaatattctctcagtagttggt
actgatgcattaaaaaagacaaaaaaagatgatgagaaatctaagaagtccaaagaagag
tatcagcaaacctggtaccatgaaggacctaacagtttgaaagtggccagactctggatt
gctaactactcactgcccagggcaatgaagcgcttggaagaagcccgtctccataaagag
attccagagacaaccaggacctcacagatgcaggagctgcataagtctctccggtccttg
aataatttctgcagtcagattggggatgatcggcctatctcctactgtcattttagcccc
aattccaaaatgctggctacagcctgttggagtgggctttgcaagctctggtctgttccc
gattgcaacctccttcatactctccgaggccataatacaaacgtaggagcaattgtgttc
catcccaagtccacagtctccttagaccaaaaggatgtcaacctggcctcttgcgctgct
gatggttctgtgaagctttggagccttgagagtgatgaacctgtagcagatatcgaaggg
cacacagtgcgtgtggcccgggtgatgtggcatccatcagggcgtttcctgggcaccacc
tgttatgaccgttcgtggcgcttatgggatttggaggctcaggaggagatcctgcaccag
gaaggccacagcatgggtgtatatgacattgccttccaccaagacggctctttggctggc
actgggggactggatgcctttggtcgagtttgggacctacgcacagggcgttgtatcatg
ttcctggaaggccacctgaaggaaatctacgggataaatttctcccccaatggctaccac
atcgcaacgggcagtggtgacaacacgtgcaaagtgtgggaccttcgacagcggcgctgc
gtctacaccatccccgcccatcagaacctagtgactggtgtcaagtttgaacctatccac
gggaacttcctgctcacaggtgcctatgataacacagccaagatctggacccacccaggc
tggtcccctctgaagactctggctggccacgaaggcaaggtgatgggtctagacatttct
tctgatgggcagctcatagccacctgctcttatgacagaaccttcaagctctggatggct
gagtag
DBGET
integrated database retrieval system
