Perognathus longimembris pacificus (Pacific pocket mouse): 125346900
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Entry
125346900 CDS
T08928
Symbol
Smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04110
Cell cycle
plop04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
125346900 (Smc1b)
04114 Oocyte meiosis
125346900 (Smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125346900 (Smc1b)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
125346900 (Smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
125346900 (Smc1b)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
125346900
NCBI-ProteinID:
XP_048195783
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All DBs
Position
1:3503848..3556876
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AA seq
1310 aa
AA seq
DB search
MGHLRLLLMENFKSWRGRHVIGPFKRFSCIIGPNGSGKSNVMDALSFVMGEKIANLRVKS
IQELIHGAHIGKPISSFASVQIIYVEEDGKEKKFSRVIQGGCSEFYFDDNLVSRSAYIAE
LEKIGIIVKAQNCLVFQGTVELISMKKPKERTQFFEEISTSGELIGEYEEKKKKLQQAEE
DAQFNFNKKKNVAAERKQAKLEKDEAERYRNLLEELKTHKIELQLFQLYYNGKKIDSLST
ELDRVNRDLSATKESFCHHENIMKAKKKEHGVLSRQLQQTEKELKSIETLLNVKRPQYIK
AKENTSHHLKKLEAFKKTIKDGDKQCSKQEDDIRILEKELVDLDNTWKFFEKQIEEKFLH
KGEDIELEASQLDHYRELKEQVRKKVAIMTQQLEKLQWEQKAEKERLAFEKRRYGEVQGN
LKQLKEQIEDHQKRIEKLEEYTKSCMECLEEKKEQEDILMDEIKKTKSRMSEVNEELNLI
RHDLENAGIDNHEGRRQQKRAEILDHLKRLYPDSVFGRLLDLCHPIHKKYQLAVTKLFGR
YMVAIVVTSEKVAKDCIRFLKEERAEPETFLALDYLDIKPINERLRELKGCKMMIDVIKT
HIPQLKKVIQFVCGNGLVCETVEEARHIAFSGPERRKTVALDGTLFLKSGVISGGSSDLR
QKARCWDEKEVKNLKDKRNQLVQELKDLMKALRKEIDLKQIQTQIQGTQTRLKYSQSELE
MIKKKQLTNFSREQSQLQSELLNIEAQCTMLNEGITEQQQKIEKFQEKIDKVEDDIFQQF
CEEIGVANIREFENTRVKQHQEVDQKRLEFEKQKTRLNVQIEYNQNQLKKKRSKINTLKE
TLQKDTEETAKLKKVEDDCLQEVDDLMEKRQQFMDMFVIQNSDTEKAQTEIEEERKKVLA
VNRDLGKLQKEIIIIQTSLEQKRLEKHNLLLDCKVQDIEVVLLLGTLEDIIDVELGTGTE
STRTTTDVYEREAAMEIDYSPLRSELKALQRDKEVQVYLTLLQEQIASKEDILLKTATPN
LRALENLKNVRDKFQESTDAFEASRKEARICRQEFEQVKRRRFELFSQCFEHVSISIDQI
YKKLCRNNSAQAFLSPENPEEPYLEGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAV
HSYRPAPFFVLDEVDAALDNTNIGKVSSYIREQAQEHFQMIIISLKEEFYSKADALIGIY
PEHNDCMFSRILTLDLSPYPCDTQGPEGRKVPDAREAGDSHSRKDEAPGMTSLAPTENGC
ANSRTIFSKALDLRGELSHSKTGVSEALLPAEEASTRLLSGHRRTPRPWR
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgggacacctgcggctcctgctcatggagaacttcaagtcctggcggggccgccacgtc
atcggccccttcaagaggttctcctgcatcatcggccccaacggctccggaaaatcaaat
gtaatggatgcacttagttttgtaatgggagagaaaattgctaatttaagagtgaaaagt
attcaggaacttattcatggagcacatattggaaaacctatttcttcttttgcaagtgta
caaattatatatgtggaggaagatggaaaggagaagaaattctcaagggttattcaaggg
ggatgctcggaattttattttgatgataatcttgtgagtcgctctgcttacattgcagag
ctggaaaagataggtataatagtcaaagcacagaactgtttagtttttcagggaactgta
gagttgatttccatgaaaaaacccaaagaaagaactcagttttttgaggaaatcagcacg
tcaggagaacttataggagaatatgaggagaagaaaaagaagttacaacaagctgaagaa
gatgcacagttcaattttaataagaaaaaaaatgtggctgcagagcgcaagcaagcaaaa
ttagagaaagatgaggcagaacgctaccgaaatctccttgaagaactgaaaacacacaag
atagagctacagcttttccagctttattacaatgggaaaaaaattgattctctgagcact
gagttagatcgtgtaaatagggatttgagtgctacaaaagagtctttttgtcatcatgaa
aatataatgaaagccaagaaaaaggagcatggagtactgtctagacaactacaacaaacc
gaaaaagaactgaaatctattgaaacacttttaaatgtgaagaggcctcagtacattaaa
gctaaagaaaacacttctcaccacctgaagaaattggaagcatttaagaaaacaataaag
gatggtgacaaacaatgttctaaacaggaggatgacataagaatcctggagaaagaactg
gttgatttagataacacatggaaattttttgaaaagcagattgaagaaaaattcttgcat
aaaggggaagacattgagctggaagctagtcagctggatcattacagagaactaaaggag
caagtaagaaagaaagtagctataatgactcaacagttggaaaaactacagtgggaacag
aaggcagaaaaggaaagactggcatttgaaaagaggcgctatggagaagttcagggaaat
ctaaagcaactaaaagaacaaatagaagatcatcaaaaacgaatcgagaagttggaggaa
tatacgaagtcttgcatggagtgcttagaagagaaaaaagagcaagaggacatcctgatg
gatgaaattaaaaaaacaaaatcaagaatgtctgaagttaatgaggaattgaatcttatt
agacatgacttggagaatgctggaattgataaccatgaagggagacgtcagcagaagaga
gcagaaattctcgatcacctcaaaaggctttacccagattctgtgtttggaagactgctt
gacctgtgtcaccctattcataagaaataccagctggctgtgactaagctttttggccgg
tacatggttgccatagttgtcacctctgaaaaggtagcaaaggattgcattcgatttctg
aaggaggaaagagcagagcctgagacattcctcgctctagattaccttgatatcaagcca
attaatgaaagactaagggaacttaaaggctgcaaaatgatgattgatgtcataaagact
cacattcctcaactgaagaaagtgattcagtttgtgtgcggaaatggcctggtctgtgaa
acggtggaggaagcaagacatattgcattcagcggacctgagagacggaaaacagtagcc
cttgatggaactctgtttttaaaatctggggtgatttctggaggatcaagtgacttaaga
cagaaggctagatgctgggatgagaaagaagtaaagaatctcaaagacaaaaggaatcag
ctggtccaggagctcaaggatttgatgaaggcactccgcaaggaaatagatttgaaacaa
atacagactcaaatacaaggaactcagacacgactcaaatattcacagagtgaactggag
atgattaaaaagaagcagcttactaacttttcccgggaacaatctcaactacaaagcgaa
ttactaaatatagaggctcagtgtactatgctgaatgaaggaatcacagaacaacagcaa
aaaattgaaaaatttcaagaaaaaatagacaaggttgaagatgacatattccaacagttt
tgtgaagaaattggtgtggcaaatattcgtgaatttgagaatacacgtgttaaacagcat
caagaagttgatcaaaaaagattggaatttgaaaaacagaaaactcggcttaatgttcaa
attgaatataatcagaaccagcttaagaagaaacggagcaagatcaacacattaaaagaa
acactccagaaagatacagaagaaactgctaagctaaagaaggtggaagacgactgtctc
caagaggtggatgacctcatggagaaacggcagcaatttatggacatgtttgtcattcag
aactctgacactgagaaagctcagactgagatcgaagaggaacggaaaaaggttttggct
gttaatagggatttgggaaaattgcaaaaggaaattataatcattcagacttcactggaa
cagaagcgattggagaagcataacttgctgcttgattgcaaagttcaagacattgaagtc
gtcctcttgctggggaccctggaggacataattgatgtggagttggggactggaacagaa
agtacccggacaaccactgacgtctatgaaagggaggcggccatggaaatcgactacagc
cctctgcggagtgagttaaaggccctgcaaagagacaaagaagtgcaggtctacttgact
ctccttcaggagcaaatagcatccaaggaagatattctgttgaagacagcaaccccaaac
ctgcgagccctggagaacttaaagaacgtcagagacaagtttcaagagtccacagatgct
tttgaggccagcagaaaggaagccagaatatgcaggcaggagtttgagcaggtgaagcgg
aggcgattcgagcttttcagccagtgctttgagcacgtctccatctcgattgaccagatc
tacaagaagctctgcagaaacaacagtgcccaggcctttcttagcccagagaatcctgaa
gagccttacctggagggaatcagctacaactgtgtggctccgggcaagcggtttatgccg
atggacaacttgtccggcggggagaagtgcgtggcggctctggccctcctgtttgctgtg
cacagctatcggcctgctccattctttgttctggatgaagtggacgcagccctggacaat
actaacattggcaaggtgtcaagttacatccgggagcaggctcaggagcacttccagatg
atcatcatctccctgaaagaagagttctattccaaagcggacgctctcattggcatctat
cccgagcacaacgactgcatgttcagccgaattctgaccctggatctttctccgtatcca
tgtgacacccagggcccagaaggccgaaaagtcccggatgctcgagaggccggagactcc
cattcccgaaaggacgaggcccctggcatgacgtcactcgcacccactgaaaatggctgt
gcaaactccaggacgatattctctaaggcacttgacctgcgaggtgaactgagtcacagc
aagactggggtctcagaggctcttcttcctgcggaggaagcctccacgcgcctcctctca
ggccaccggcggacccctcggccgtggcgctga
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