Perognathus longimembris pacificus (Pacific pocket mouse): 125347008
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Entry
125347008 CDS
T08928
Symbol
Vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125347008 (Vps50)
Membrane trafficking [BR:
plop04131
]
Protein recycling
Others
EARP complex
125347008 (Vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
125347008
NCBI-ProteinID:
XP_048195990
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Position
2:117127973..117223295
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AA seq
964 aa
AA seq
DB search
MQKIKSLMTRQGLKSPPESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
YFSADSFDIVKYELEKLPPILNLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDSEDATSASEG
SNMMGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
LQLHEFKFMEQSRSPSVSPSKQPTSSSSKATTLFEQYCSGGNPFEIQANHKDEETEDVLA
SNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPVKSVSRETLKSRKKSDYSLN
KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
ESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLAAAEERKEKVPSPHLSHLVVLTSG
DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
YWIVAGKAIDYEQMLLLMASVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIP
LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDID
RPKR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcaaatctcttatgacccggcagggtttaaaaagcccccctgagagcctc
agtgatcttggtgccattgagagtctgcgggtccctggaaaggaggaattcagggaactt
cgagaacagccaagtgaccctcaagctgaacaagagctaattaatagtattgagcaagtc
tatttttctgcagactcatttgatattgttaaatatgagctggagaaacttccacctatt
ctcaatttgcaagaattggaggagtaccgagacaaattgaaacaacagcaagctgcagtc
tctaaaaaagtagctgatttaatccttgagaaacagcctgcttatgtaaaggaacttgaa
agagttacctcgttacagacaggactacagttagctgctgttatctgcacaaatgggagg
agacatttgaatattgcaaaggaaggttttactcaagctagcttaggccttcttgcaaat
cagaggaaacgtcagttgctgattggacttctgaagtctctgagaactataaaaacattg
caaagaacagatgtacgcttaagtgaaatgctggaggaggaagactatccaggagctatt
cagttgtgcctggaatgtcaaaaagctgccagcacttttaaacattacagttgtataagt
gagttgaattcaaagcttcaagacactttggaacaaattgaggaacaattggatgtagca
ctttcaaaaatctgcaagaattttgacattaatcattataccaaggtgcaacaagcttat
cgacttcttggaaaaacacagactgcaatggatcaacttcatatgcactttactcaagcc
attcacaatactgtatttcaagttgtccttggttatgtggaactatgtgcaggaaacacg
gacacaaaatttcaaaagctgcaatacaaagatctctgtacacatgttacaccagatagc
tacattccatgcctggcagatctgtgcaaagcactatgggaagttatgctcagctactac
aggaccatggagtggcacgaaaagcatgacagtgaggatgcgacttcagcttccgaaggg
agtaatatgatgggtactgaagaaactaattttgatcgtggctacataaagaagaagtta
gaacatggacttacacgaatatggcaggatgttcagctaaaagtaaaaacctacttgctt
ggaactgatttgtctatattcaaatatgatgatttcatctttgttttggatataataagc
aggttgatgcaggttggagaagaattttgtggtagcaaatctgaagttttacaagagtct
attagaaaacagagtgtcaattatttcaagaactatcatagaacacggcttgatgaactg
agaatgttcttagagaatgagacttgggaactttgtcctgtgaagtcaaatttcagcatc
ttgcaacttcatgaatttaaattcatggaacagtcccgatccccatcagtttcacctagt
aagcagccaacatcgagttcttcaaaagcaacaacattgtttgagcagtactgtagtggt
gggaatccatttgaaattcaagccaaccacaaagatgaagaaacagaggatgtcttggct
tctaatgggtatgagtctgatgaacaagaaaagagtgcctatcaagaatatgacagtgac
agtgatgttcctgaggaactcaagcgagattacgtggatgagcagacaggcgatgctcca
gtaaaaagtgtttctcgagaaaccctaaaaagcaggaagaaatcagattacagtctaaat
aaagtgaatgcacctatcttaacaaatacaacactaaatgtaataagacttgttgggaaa
tatatgcaaatgatgaacattcttaaaccaattgcctttgatgttatccatttcatgtcc
cagctctttgattattacttgtatgcaatatataccttttttgggcgaaatgattcatta
gaatcaacaggacttggtcttagtagtagtcgactaagaacaactttgaacaggatacaa
gagagcctaattgatctggaagtctcagctgatcccactgccacacttgcagcagcagaa
gaaagaaaggagaaggtacccagcccacaccttagtcatctagtggttttgacatctggg
gatacattatacggattagcagaaagagtggtagccaccgaatccttggtgttcttggct
gaacagttcgagttccttcagccacatctggatgctgtgatgcctgcagtcaaaaagccc
tttctgcagcagttctattctcagacggtctcaactgccagtgaactgcgcaagccaatt
tactggattgtagctgggaaagccattgattacgaacagatgctgctcctaatggctagc
gtgaagtgggatgtaaaggaaattatgtcacagcacaacatatatgtagatgcattgtta
aaggaatttgagcagtttaacagaaggttaaatgaagtgtcaaagagagttcggataccc
ttgcctgtgtctaatatactgtgggaacattgtatacgactggctaatagaactattgta
gaaggatatgccaacgtcaaaaagtgcagtaatgaaggtcgggccttaatgcaattggat
ttccagcagtttttaatgaaacttgaaaaactgactgatattagacccattcctgataag
gaatttgtggaaacctacatcaaggcttactacctaactgagaatgacatggaacgctgg
atcaaagagcacagggaatattcaacgaagcagctgaccaacctggtaaatgtttgcttg
ggatcccatatcaataagaaagcaagacaaaaacttctggcagctatagatgatatagat
agacctaaaagataa
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