Perognathus longimembris pacificus (Pacific pocket mouse): 125347190
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Entry
125347190 CDS
T08928
Symbol
Trim24
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
plop01001
]
125347190 (Trim24)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125347190 (Trim24)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125347190 (Trim24)
Protein kinases [BR:
plop01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
125347190 (Trim24)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125347190 (Trim24)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
PHD-1st_NSD
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_2
CRIC_ras_sig
Motif
Other DBs
NCBI-GeneID:
125347190
NCBI-ProteinID:
XP_048196245
LinkDB
All DBs
Position
2:142427743..142514547
Genome browser
AA seq
1055 aa
AA seq
DB search
MEVAVEKAAAAAAPAAAAGGPSAAPSGENEAESRQGPDSERGGEAAPLNLLDTCAVCHQN
IQSRAPKLLPCLHSFCQRCLPAPQRYLMLPVPMLGSAETPPPLPGPGPGPGSGSPASGST
PFATQVGVIRCPVCSQECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFC
VECVEWLCKTCIRAHQRVKFTKDHTVRQKEEVSPEAVGVTSQRPVFCPYHKKEQLKLYCE
TCDKLTCRDCQLLEHKEHRYQFIEEAFQNQKVIIDTLITKLMEKTKYIKYTGNQIQSRII
EVNQNQKQVEQDIKVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVAGLSKQL
EHVMHFSKWAVSSGSSTALLYSKRLITYRLRHLLRARCDASPVTNNTIQFHCDPSFWAQN
IINLGSLVIEDKESQPQMPKQNPVVEQNAQSSGGLPSNQLSKFPTQISLAQLRLQHMQQQ
VMAQRQQVQRRPAPVGLPNPRMQGPIQQPSISHQQSPPRLINFQNHNPKPNGPVLPPHPQ
QPRYPPSQSIPRQAIKPNPLQMAFLAQQAIKQWQVSSGQAVPSTASSTSSTPSSPTITSA
AGCDGKGFGSPMIDLNSSVGGGSYNLPSLPDIDCSSTMLLDTVVVRKDSTTDQAQPRPPS
NRAVQSPNSSVPSPGLAGPVTMTSVHPPIRSPSASSVGSRGSSGSSSKPAGADSTHKVPV
VMLEPIRIKQENSGPPENYDFPVVIVKQESDEESRPQNTNYPRSILTSLLLNSSQGSSSE
EPVLRSDAPDSTGDQPGLQENSSNGKAQWLDAPQKSPLHVAETRKDDDPNEDWCAVCQNG
GELLCCEKCPKVFHLSCHVPTLANFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKRKSE
SLVKLSPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYRIIKNPMDLSTIKKRLQED
YYMYTKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLESYFEELLKNLYPEKRFPKLEF
KNESEDNRCSDDSDDDFVQPRKKRLKSIEERQLLK
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggctgtggagaaggcagcggcggccgcggctccggcagcggccgccgggggg
ccctcggcggccccgagcggggagaacgaggccgagagccggcagggcccggactcggag
cgcggcggtgaggcggccccgctcaacctgttggacacttgcgccgtgtgtcaccagaac
atccagagccgggcgcccaagctgctgccctgcctgcactcgttctgccagcgctgcctg
ccggcgccccagcgctacctcatgctgcccgtgcccatgctgggctcggccgagaccccg
ccgcccctgcccggccccggcccgggccccggctccggctcgccggccagcggctccacg
ccgttcgccacccaagttggagttatccgatgtccagtgtgcagccaggaatgtgcagag
agacacatcatagataacttttttgtgaaggacactactgaggttcccagcagtaccgta
gaaaaatctaatcaggtgtgtacaagctgtgaggacaatgctgaagctaatgggttttgt
gtagagtgtgttgagtggctctgcaagacttgcattagagcccatcagagagtgaagttc
accaaagaccacacggtcagacagaaagaggaagtatctccagaggcagttggtgtaacc
agtcagcgaccagtgttttgtccttatcataaaaaggagcagttgaagctttactgtgag
acatgtgacaaactgacctgtcgggactgtcagctgctagaacacaaggagcacagatat
cagtttatagaagaagcttttcagaatcagaaagtgataatagatacactgatcaccaaa
ctgatggaaaaaacaaagtacattaaatatacaggaaatcagatccaaagcagaataatt
gaagtaaatcaaaatcaaaagcaggtggaacaggatattaaagttgctatcttcacactg
atggtagaaataaataaaaaaggaaaagctctgctacatcagctagagagccttgcaaag
gaccatcgcatgaaacttatgcagcaacaacaggaagtggctggactttctaagcagttg
gaacatgtcatgcatttttctaaatgggcagtttccagtggcagcagtacagcattactt
tacagcaagagactgattacgtaccggctgcggcacctccttcgtgccaggtgtgatgct
tcccccgtgacaaataacaccatccagtttcactgtgacccaagtttctgggcccagaat
attatcaacttaggttctttagtaattgaagataaagagagccagccacaaatgcctaag
cagaatcctgtggtggaacagaatgcacagtcatcaggtggtttaccttcaaaccagtta
tccaagtttccaacacagatcagcctagctcagttacgactccagcatatgcagcaacag
gtaatggctcagaggcaacaggtgcaacggaggccagcacctgtgggtttaccaaaccct
agaatgcaggggcccatccagcaaccttccatctctcatcagcagtcccctccacgtttg
ataaactttcaaaatcacaaccctaaacccaatgggccagttcttcctcctcatcctcag
caaccaaggtacccaccaagccagagtataccacgccaagcaataaaacccaacccccta
caaatggctttcctggctcaacaagccattaaacagtggcaggtcagcagcgggcaggcc
gtcccctccaccgccagcagcacgtcctcaacgccttccagtcccaccatcaccagtgct
gcaggctgcgacggaaagggctttggttcacctatgatcgatttgaattcgtcagtagga
ggaggctcttacaatcttccttctcttccagatattgattgttccagtactatgctgctg
gacactgtggtggtaaggaaggattccactacagatcaggcccagccaagaccgccctca
aacagagcggttcagtcaccaaattcatcagtgccctcgccaggactggcaggacctgtt
actatgactagcgttcaccccccaatacgttcacctagtgcctccagcgttgggagtcga
ggaagctctggctcttccagcaaaccagcgggagcagattctactcacaaagtcccagtg
gtcatgttggagccaattcgaataaaacaagaaaacagtggaccacccgaaaattatgat
ttccctgttgttatagtgaaacaagaatcagatgaagaatctagacctcaaaataccaac
tatcccagaagcatacttacttccttgctcttaaatagtagccaaggttcttcttctgag
gaacctgtgctgagatccgatgcccctgacagcacaggagatcagcctgggctccaggaa
aattcctccaatggaaaggcccagtggctggacgccccccagaagtcgccccttcatgtt
gcggagacgaggaaggacgatgaccccaatgaggactggtgtgcggtgtgtcagaatgga
ggagagcttctatgttgtgaaaagtgccccaaagtcttccatctctcctgccatgtgccc
accttggcaaattttccaagtggagaatggatttgtactttttgccgagatttatcaaaa
cctgaagttgaatatgattgtgacgctcctagtcataactcagaaaaaaggaaatctgaa
agccttgtgaagttatcaccaatagacaaaaggaagtgtgaacgcctacttttgtttctt
tactgccacgaaatgagcctggcttttcaagaccctgttcctctgactgtgcctgattat
tacagaataattaaaaatcccatggacttgtcaactatcaagaaaagactccaagaggat
tattacatgtacacaaagcctgaagattttgtagctgatttcaggttgatctttcaaaac
tgtgctgaattcaatgagcctgattcagaagtagccaatgctggtataaaacttgaaagt
tattttgaagaacttctaaagaacctttatccagaaaaaagatttcctaaacttgaattc
aagaatgaatcagaggataatagatgtagcgatgactcagacgatgactttgtacagccc
cggaagaaacgcctcaaaagcatcgaggaacgccagttgcttaaataa
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