Perognathus longimembris pacificus (Pacific pocket mouse): 125347909
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Entry
125347909 CDS
T08928
Symbol
Rnf17
Name
(RefSeq) LOW QUALITY PROTEIN: RING finger protein 17
KO
K18405
tudor domain-containing protein 1/4/6/7
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125347909 (Rnf17)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125347909 (Rnf17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Agenet
zf-RING_5
zf-RING_UBOX
zf-C3HC4
SNase
zf-RING_2
zf-C3HC4_2
Spectrin
Arg_repressor_C
TRAF3_RING
DUF4635
Motif
Other DBs
NCBI-GeneID:
125347909
NCBI-ProteinID:
XP_048196801
LinkDB
All DBs
Position
3:63056904..63142403
Genome browser
AA seq
1617 aa
AA seq
DB search
MAAEGSTARLALTPYQQVGCKSPPWGAAEIQCMGCGRRVSSASGRHYVLQCGHAFCELCL
LVTEEYSTVKCPNCEVATTVNIRKGFYPTDGCSKEDSPMNKVQLKMIKNCSPDLKKADDQ
LNIGLEQSASIHRMVLNSAMISETKTTEEIDEALKIAGCNFEQLNISIKMLEQTQSQTKK
ETDHLIEVVEKQFDKLFASLESRKKKLCEELVRNTDDYLSNLVLTKNYLEEKKNDLDAAM
KIARELKSAPSLRTYCDLTQIIRTLKLTFGSELSQVNYLKPRSPPRLNMNCSEIICMFSN
MGKLEFEAPTKNYHQDNEVGQNIQKKXNNKMDLXGTYSSLEKGKKTDMSIPTSDASALPL
QMETSDKYSEEKNIPPQEEMVTVTSPKMVPVLPQIGSTPDVIIEEIIEENVESFSEFIFV
SHVIHPCHFYVRKYSHIKDATVLEKKVNQICNTSLHLDLSDTLELGARIFVNSIENGMWC
RGTITELIPIKSKNTRKPCSPTKFSVHEVALIQIFMVDFGNSEVLIVRGVGDTSMRPEHV
TAQHVTVNDLCLALRKYELYNEELWKDIPPLAHACSLKDIVPHNSDEGWEEEAKVEFLKM
VNNKAVLMKVFREEDNVLIVDLQKPPTNKISSDMPISLRDALVFMELARFRSQSPGSHDE
KNMALPYHPPILPKEMTDVSVMVCHINNPADFYLQLVENFDFLFLLKTIEEFYKDEDGES
LEILCPVQDQACVAKFEDGVWYRAKVTGLPGHREVEVKYVDFGNTAKITVREMRKIKDEF
LNTPEKAIKCKLAYIEPYKRTSQWSKKAKEKFEEKTQDKFMTCSVIKILEDNVLLVELFN
SCCAPGMIPTSINDQLVKEGLASYEAGYTLKDNSKKHTEVWDPSPEEIISNEVNNLNPMP
VKSLPNENFQSFYNKELPVHICNVISPEKIYVQWLLTENLLNSLEEKMIATYENSEWEPT
KWESDMHCAVKVPDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNINCLRELQEDLKTM
GRLSLECSLVDIRPAGGSDKWTATACDCLSLYLTGAIATIILQVGSRENHITWPLPVKIY
CRDEKGDRVDVSKYLIKKGLALRERRTNKSDHNHSSEKSLEMPLEQGDLVITESHKINFD
TDRKAADTISEPKIPEVKEKMPETRVTGCYKPPAVPNMQVFEAIVSCIGDDGTIFVVPKS
SEFDLVKMMNEIQSNLKCLGLLEPYCWKKGEPCAVRGSDTMWYRGKVVEVLGGTVRVQYL
DHGFTEKIPQCHLYPILLYPDTPQFCIPCRLFQTIPVGNVWQPDAIELLQELLSKREVDI
HVVELPETPWKELSIHLYFDGMSLSHFMALHKYCTFEHSEEIFKEKPTDYNTKYEEEKWE
IKFEDLLLSDREDSVLQPFSSTSLPPPEELYPVQVTHVVSPSEVYICLDSVGNYNQFNHR
NDTGDSGELKSESLEEALQRFNKTVETFPPLTDFRIEMPCLAKYTDGLWYRAKIVSIKEF
NPLSVLVQFVDYGSTEKLAVNRMRQIPHHLMQYPARAIKVLLAGFKPPLKDSEKTRIPYC
PKWSMEALWAMIDCLQGKQLYASSMAQAPEQTVTLYEDEQYPVHLALVEMGLADTDE
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggctcgactgcacggcttgccttgactccttaccagcaggttggatgt
aagagtcctccgtggggtgctgctgagatccagtgcatggggtgtggaagaagggtgtcc
agcgcttctggtcgccactatgttcttcaatgtggacatgcattttgtgaactgtgcttg
ttagtaactgaagaatacagcacagttaaatgtcccaattgtgaggttgctacaactgta
aatataagaaaaggattctacccaacagatggttgtagtaaagaagattctcctatgaac
aaagtacaactcaaaatgataaagaattgctctccagatttaaaaaaggcagatgatcag
ctaaatattggtttagaacaatcagcctccatacacaggatggttttgaattcagctatg
atatcggaaactaaaactacagaagaaattgatgaagcactgaaaatagcaggctgtaat
tttgaacaattaaatatttctataaaaatgcttgaacaaacacagagccaaacaaagaag
gagacagatcatcttatagaagttgtagagaaacagtttgataagctttttgcttctctt
gagtctaggaaaaagaaattgtgtgaagaacttgtaagaaatacagatgattatttgtca
aatttagtattgactaaaaactaccttgaagagaaaaaaaatgacttggatgcagctatg
aaaatagcaagagaattgaaatcagcaccttctctgagaacatactgtgaccttactcag
attattcgaactctgaaattaacatttggcagtgaattatcacaagttaattatcttaaa
ccaaggagccctcccaggttgaatatgaattgcagtgaaattatctgcatgttcagtaat
atgggaaaacttgaatttgaggccccaacaaaaaattatcaccaagataatgaagttgga
cagaatattcaaaagaaataaaataataaaatggaccttngtggcacctactcatcacta
gaaaaggggaaaaaaactgacatgtctatccctaccagtgatgcctctgcacttcctttg
caaatggagaccagtgacaaatattcagaagagaaaaacattccaccacaggaagagatg
gttacagtgacgtcccccaaaatggttcctgtactacctcaaataggatctacccctgat
gtgataattgaagaaatcattgaagaaaatgtagaatccttcagtgagttcatttttgta
agccatgtaatacacccttgccacttctacgttcggaagtattcacacataaaagatgca
acagtactggaaaagaaggtgaatcaaatctgcaatacgagtttacaccttgatctttct
gataccttggagctaggtgcaagaatatttgtcaacagtattgaaaatggaatgtggtgt
cgaggaactatcactgaattaattccaataaaaagtaaaaatactagaaaaccttgtagt
ccaaccaagttctcagttcatgaagttgcactaatacaaatattcatggtagattttgga
aattctgaagtcctaattgtcagaggagttggtgatacttctatgagaccagaacacgtt
actgcacagcatgttacagtaaatgatttgtgtctggctctaaggaaatacgagctgtat
aatgaagagctgtggaaagacatcccacccttagcccacgcatgctccttgaaagatatt
gttccacataattcagatgaaggctgggaagaggaagcaaaagtagaatttttgaaaatg
gtaaataataaagctgttttaatgaaagtttttagagaagaggataatgtgcttattgta
gatctacagaaaccgccaacaaataaaataagcagtgatatgcctatatctcttagagat
gcattggtttttatggaactagcaaggtttaggtctcaatcaccaggaagtcatgatgaa
aaaaatatggctttaccctatcacccacctatcttgcctaaagaaatgacagatgtttct
gttatggtttgtcatataaataatcctgcagatttctatctccagttggtagagaatttc
gattttttatttctattaaagacaattgaggaattctataaagatgaagatggggaaagt
ctggaaattctttgtccagttcaagatcaagcctgtgtagctaaatttgaagatggagtt
tggtaccgagcgaaagttactggattgcctggacatcgggaagttgaagttaaatatgtg
gacttcgggaatactgcaaaaataacagttagagagatgcgtaaaataaaggatgagttt
ttgaatactccagagaaggcaattaaatgtaagctggcatacattgagccatataaaaga
acatcacagtggtccaaaaaagctaaagaaaaatttgaagaaaagactcaagataaattc
atgacgtgctcagttattaaaattctggaagataatgtgctgttagttgaactttttaat
tcttgctgtgctcctggaatgattcctactagcattaatgaccaacttgtcaaagaaggc
ctagcatcttatgaagcaggttatactctcaaagataactctaaaaagcatactgaagtg
tgggatccttctccagaagaaattatttcaaatgaagtaaacaacttaaatcccatgcct
gtaaaatctctacctaatgaaaatttccagtcattttataataaggaactgcctgtgcat
atctgtaatgtaatatctcctgagaagatttatgttcagtggctactaacagaaaactta
cttaatagtttagaagaaaagatgatagctacttacgaaaactcagaatgggaacctact
aaatgggaaagtgacatgcactgtgctgttaaggtcccagataaaaatcagtggcgaaga
ggccagatcatccgaatggttacagacacactggtagaggtcttactgtatgatgtgggc
gttgaactagtagtgaatattaactgtttaagagaacttcaagaagatctaaagacgatg
ggaagattatctttggagtgctctcttgttgatataagaccagctggcgggagtgacaag
tggacagctacagcttgtgactgtctttctttgtacctcactggagccatagcaactata
atcttacaggtgggcagtagggaaaaccacataacatggccattacctgtgaaaatttac
tgtagagatgaaaaaggagatcgagttgatgtttctaaatacttgattaaaaagggtttg
gctttaagagagagaagaactaataaatcagatcacaaccattcatctgagaagtctcta
gaaatgcccctggaacaaggagacttggtcattactgagagtcataaaattaactttgac
actgacagaaaagctgctgatacaatcagtgaacctaagatacctgaagtgaaagagaaa
atgccagaaacaagagtcactggatgctataaaccaccagctgttcctaacatgcaagta
tttgaggcgatagtcagctgcattggtgatgatggaactatatttgtggtccctaaatca
tcagaatttgacctagtgaaaatgatgaatgaaattcaaagcaatttaaagtgccttggc
cttttggagccttactgctggaagaaaggagagccgtgtgcggtccgaggatcagatacc
atgtggtaccgaggcaaggtggtggaagttctaggcggcactgtcagggtacaatactta
gatcatggattcactgagaagattccacagtgtcatctttatcctattttgctgtatcct
gacacaccccagttttgtattccttgtcgactctttcagactataccggttgggaatgtc
tggcagcctgatgcaattgagcttcttcaggaactactttcaaagagagaggtggacatc
catgttgtggaattgcctgaaaccccctggaaggaattgtctattcatctctattttgat
ggaatgtcactttcccacttcatggcacttcataagtactgcacttttgaacattcagag
gagatttttaaagaaaaacccacagattacaatacaaagtatgaggaggaaaaatgggaa
ataaaatttgaggacctgcttttgtctgacagagaggattctgttttacaacccttctca
tccacatctctgcctcccccagaagaactgtaccctgtgcaagtgacgcacgtcgtgtcg
cccagtgaagtatatatttgcctggattctgtaggaaattataatcagttcaaccatcgt
aatgacacaggtgacagcggggaattgaaatcagagagcctggaagaagcgctgcagagg
tttaataagactgtggagacctttcctcctctgacagattttagaatagaaatgccttgc
cttgcaaaatatacagatggcttatggtatagagcaaagattgtttccataaaggaattt
aatcctttatctgtcctggtacagtttgttgattatggatcaactgaaaagctggcagta
aatagaatgcgtcagattcctcatcatcttatgcagtacccagcacgagccataaaggtt
ctcttggcaggatttaagcctcctttgaaggactccgagaagacaagaataccgtattgc
cccaagtggagcatggaggcgctgtgggctatgatagactgtcttcaaggaaaacagctt
tatgcttcttccatggctcaagcaccagaacaaacggtgacactatatgaagatgagcag
tacccagttcatctggccctagtggaaatggggcttgcagacacggatgaatga
DBGET
integrated database retrieval system
