Perognathus longimembris pacificus (Pacific pocket mouse): 125348107
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Entry
125348107 CDS
T08928
Symbol
Col4a2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04151
PI3K-Akt signaling pathway
plop04510
Focal adhesion
plop04512
ECM-receptor interaction
plop04820
Cytoskeleton in muscle cells
plop04926
Relaxin signaling pathway
plop04933
AGE-RAGE signaling pathway in diabetic complications
plop04974
Protein digestion and absorption
plop05146
Amoebiasis
plop05165
Human papillomavirus infection
plop05200
Pathways in cancer
plop05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125348107 (Col4a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125348107 (Col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125348107 (Col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125348107 (Col4a2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
125348107 (Col4a2)
09154 Digestive system
04974 Protein digestion and absorption
125348107 (Col4a2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125348107 (Col4a2)
09162 Cancer: specific types
05222 Small cell lung cancer
125348107 (Col4a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
125348107 (Col4a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
125348107 (Col4a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125348107 (Col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125348107 (Col4a2)
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125348107 (Col4a2)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125348107 (Col4a2)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125348107 (Col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125348107
NCBI-ProteinID:
XP_048197052
LinkDB
All DBs
Position
3:complement(1375102..1467481)
Genome browser
AA seq
1707 aa
AA seq
DB search
MGRSPTAAPGAALRRWLLLAAATLCLARGALAGVKKLDVPCGGRDCSGGCQCYPEKGGRG
QPGPVGPQGFSGPPGLQGFPGLQGRKGDKGERGIPGITGPKGDVGARGVSGFPGADGIPG
HPGQGGPRGRPGYDGCNGTSGDAGPQGPSGSGGFPGSPGPQGPKGQKGEPYALPEEERSK
YRGESGEPGLVGYQGPPGRPGPIGPMGPVGAPGRPGPPGPPGPKGQPGNRGLGFYGEKGE
KGDMGRPGPNGIPSDVTFIGTPTTTYHPDLYKGEKGSEGEPGVPGVSLKGEEGVMGFPGA
RGLPGLHGEIGSQGQKGGRGVDGFQGPIGPRGPKGEQGEPGPPGPPAYSPHPSLAKGARG
DPGFPGAHGEPGFRGEPGEPGPAGVPGPSADREDERRGLSGEMGPKGFAGDPGLPARYPG
PPGADGKPGLPGAPGPAGPPGPDGYLFGRKGSGGRVGRPGPPGFPGTRGQKGWKGDSGDC
KCDDGFVRGLPGRPGPKGFPGTNGQPGRKGEPGDPGQHGIPGFPGFKGAPGPAGFPGPKG
IKGDSRTLTTKGERGQPGVPGVHGMKGDDGVPGRDGLDGFPGLPGPPGDGVQGPRGDAGR
PGVPGAKGFPGEVGPPGLGLPGPKGQSGFPGDAGLPGPPGLQGPPGPPGTPGQIDCDTDV
KRPLGGDGQDAIHPDCVGGRPGSPGLPGPPGPTGVKGLRGTPGLSGEDGAPGLKGFPGEP
GREGFPGPPGFMGPRGSKGAAGLPGPEGLPGPVGRPGPAGPPGDRGLPGEVLGAQPGPRG
DAGLPGHPGLKGPPGDTGPPGFRGSQGMPGMPGLKGQPGLPGPSGHPGLPGPPGQHGFPG
APGQGGPLGRPGAPGFGGLPGERGDPGDAGAPGPVGMKGLSGDRGEAGFLGEQGHRGNPG
LQGMAGVPGVPGQKGDRGSPGMHGFQGMTGLKGRPGFPGSKGEAGFFGTPGLKGLPGQPG
VKGNRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGLKGLQGMPGVPGLAGIPGL
PGRPGHVKGTKGDIGVPGIPGLPGFPGVSGPPGIVGFPGFTGSRGDKGAPGREGLYGETG
QRGDLGDIGDTIDLPGSPGLKGERGPPGTTGVKGFFGEKGTEGDVGFPGITGVTGAQGPP
GPKGQTGFPGLVGPQGPQGDPGRAGAPGQKGDYGWPGNPGLPGFPGFRGIGGLHGLPGTK
GSPGSPGADIHGDPGFPGPVGNKGEPGEANTLPGPAGPPGQKGQQGAPGERGPAGSPGLQ
GFPGVGPPSNISGLPGDVGAPGIFGLEGYRGPPGPPGPAALPGSKGEDGRPGASGSAGSK
GWVGDPGPQGRPGVFGVPGEKGPKGQQGLMGSVGPSGPVGDRGPKGPKGDQGFPGAPGSV
GAPGIAGQPPRLAVQPGTSGPQGRRGPPGAQGEMGPQGPPGEPGFRGTPGKAGPQGRGGV
SAVPGFRGDQGPMGHQGPVGQEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMCP
VGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSY
WLSTTAPLPMMPVAEEEIQPYISRCSVCEAPAVAIAVHSQDASIPHCPXGWRSLWIGYSF
LMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTIPERSFQ
SAPAADTLKAGLIRTHISRCQVCMKNL
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgggccggagcccgacggcggcgcccggcgcggccctgcggcggtggctgctgctggcg
gcggcgaccctgtgcctggcccgcggcgcgctggcgggtgtgaagaagttggatgtgccc
tgcggagggagagactgcagcggcggctgccagtgctacccagagaaaggaggccggggc
cagccgggacccgtgggcccccaggggttcagtgggccccccgggctgcaaggattcccc
ggactacaaggtcgcaaaggtgacaagggcgagcgcggcatcccggggatcaccggaccc
aaaggagacgtgggagcccgcggcgtgtctgggtttcctggggccgacgggattcccggg
cacccgggacaaggcgggcccaggggaaggcccggctacgacggctgcaacgggaccagc
ggcgacgcggggccgcagggaccatccggctcggggggcttccccgggtccccagggccc
caaggacccaaagggcagaaaggcgaaccgtacgcactgcccgaagaggaacgcagcaag
taccggggcgagagcggagagcccggattggttggctatcaggggcctcctggccgcccc
ggacccatcggccccatgggtcccgtcggagctccgggaagaccgggaccccccggaccc
cctggaccaaaaggacagccaggcaacagaggactcggtttctacggcgaaaagggtgaa
aagggcgacatgggccggccgggacccaacggcattccgtcggacgtcaccttcatcggg
accccgaccaccacgtaccacccggacctgtacaagggcgaaaaggggagcgaaggagag
ccgggagttccgggcgtctccctgaagggcgaggaaggagtcatgggcttcccgggagct
cggggtctccccggcctccacggagagatcggatctcaaggacagaagggaggcaggggt
gtggacggcttccagggccccatcggacccagaggacccaagggagaacaaggggaacca
ggccccccgggaccgcccgcctactccccgcacccttccctggccaaaggcgccagaggc
gacccaggattcccaggggctcacggagagccgggattccggggcgagccgggagagccg
ggccccgcgggagtccccgggccgtccgccgaccgcgaagacgagaggagaggcctgtcc
ggcgagatgggacccaaaggcttcgccggggacccgggcctccccgcccggtaccccggc
ccacccggagcggacggcaaacctgggctcccgggagcccccgggcccgcgggacccccc
ggaccggacggttacctgttcggccgtaaaggatcgggaggaagagtgggccgtcccggg
ccccccggattccccgggactcgagggcagaaggggtggaaaggcgactctggggactgc
aagtgtgacgacggcttcgtcaggggcctcccgggacggccaggccccaagggctttccg
ggcaccaacgggcagccggggaggaaaggagagccgggcgaccccgggcagcacggcatc
ccggggttcccggggttcaagggagcccccggcccggctggctttcccggccccaagggg
atcaaaggagactcgaggaccctcaccaccaaaggcgagcggggacagccaggcgtcccc
ggcgtgcacggaatgaagggggacgacggcgtcccgggtcgcgacgggctcgacgggttc
ccgggcctcccgggcccccctggcgatggcgtccagggccctcggggcgacgcaggccgc
ccgggcgtacccggagccaagggctttccaggagaagtggggcccccaggcctgggcttg
ccgggcccaaagggccagtctggcttcccaggagacgcaggactgccgggacccccaggt
cttcaggggccccccggcccccccggaactccgggacagatagattgtgacaccgacgtg
aagagacccctcggcggagacgggcaggacgccattcacccagattgcgttggaggacgc
ccaggatcacctggcctgccaggcccccccggccccacaggtgtgaaaggcctccgaggg
acaccgggactctcgggagaggacggagccccgggactcaagggcttccccggagagccg
ggccgcgaaggcttccccgggccccccgggttcatgggaccccgaggatccaaaggggcc
gcgggcctgccaggccccgagggactcccgggccccgtcggccggccgggccccgcgggg
cctcctggagacaggggccttccgggagaagtcctgggggcccagcccgggcctcgggga
gacgcagggctgccgggacaccccgggctgaaaggcccgccgggagacaccggcccgccc
ggattcagaggaagccaagggatgcccgggatgccggggctcaagggccagccgggcctc
cccgggccctcgggtcacccgggcctgcccggaccccccggacagcacggattcccggga
gccccggggcaaggagggcccttggggcggccgggcgccccaggttttggaggcctgccc
ggggagaggggggaccccggcgacgcgggcgcccccggccccgtgggcatgaaagggctc
tctggagaccgaggcgaagcgggcttcttgggcgagcaaggccatcgagggaaccccgga
cttcaaggaatggctggcgtgcctggtgtccctggacagaaaggggatcgaggctctccc
gggatgcacggcttccagggcatgacgggactcaagggaaggcccggcttcccaggctcc
aaaggagaggctgggtttttcggaacgcctggtctgaagggcttgccgggccagccgggt
gtcaaaggcaaccgaggagaccccggtcccccgggaccgccccccatcatcctgccaggg
atgaaggacatcaagggggagaaaggagatgaagggcccatgggcctgaaggggtacctg
ggcttgaaaggactccaaggcatgcccggggtcccggggctggcaggaatcccaggcctt
cccgggaggccgggccacgtcaaaggaaccaagggcgacatcggagtcccaggcatcccc
gggctgccgggcttccccggcgtgtctggcccccccggaattgtggggttcccagggttc
acaggaagcaggggggacaagggcgctcctggcagagaaggcctgtacggcgagaccggc
caaaggggggacttaggtgatatcggagacaccatcgacttgccgggaagcccgggtctg
aaaggggaacggggcccccccggtacgacaggggtgaagggattcttcggagagaaaggg
acggagggcgacgtcggcttccccgggataacgggtgtgactggagcccaggggcccccc
ggacccaaaggacagacgggcttcccggggctcgtggggccgcaggggccgcagggggac
cccgggcgggccggagcgccggggcagaaaggagactacggctggccgggcaacccgggc
ttgccagggttcccggggttccgcggcatcggaggcttacacggcttgccaggcaccaaa
ggctcccccgggtcaccaggtgccgacatccacggagaccccggcttcccaggccccgtg
gggaataagggtgaacccggagaggccaacaccctgccgggcccagcggggcccccgggc
cagaagggacagcagggagccccaggcgagcgaggcccagctgggagccccggcctgcag
ggcttccccggcgtcggccccccatccaacatctccgggctgccgggtgacgtgggggcg
ccgggcatctttggcctggaaggttaccggggcccccccgggccccccgggcccgcggct
ctgcccgggagcaaaggagaggacgggaggcccggcgcctccggaagcgccgggtccaaa
ggctgggtgggggaccctgggccccagggccgccctggggtgttcggcgtcccgggagaa
aaagggcccaaggggcagcaaggcctgatgggcagcgtcggaccttccgggcccgtgggt
gacagaggccccaaggggcccaaaggagaccaaggattcccgggtgcccccggctctgtg
ggggcccccggcatcgcgggacagccccccaggctcgccgtgcagcccggaacatcgggc
ccccaggggaggagaggcccgcccggggctcagggagagatggggccccaggggcccccc
ggagagccaggcttccgggggactccagggaaggccggaccgcaaggaagaggcggcgtg
tctgccgtgcccgggttccggggagaccaagggcccatgggacaccagggccccgtcgga
caagagggggagccgggccgtccggggagcccgggcctgcccggcatgccggggcgcagc
gtcagcatcggctacctcctggtgaagcacagccagacggaccaggagcccatgtgcccc
gtgggcatgaacaagctctggagcggctacagcctgctctacttcgagggccaggagaaa
gctcacaaccaggacctagggctggccggctcgtgcctggcgcgcttcagcaccatgccc
ttcctgtactgcaacccgggcgacgtgtgctactacgccagccgcaacgacaagtcctac
tggctgtccaccaccgcgccgctgcccatgatgccggtggccgaggaggagatccagccc
tacatcagccgctgctccgtgtgcgaggcccccgccgtggccatcgccgtgcacagccag
gacgcgtccatcccgcactgcccgnccggctggcgcagcctgtggatcggctactccttc
ctcatgcacacggccgctggggacgagggcggcgggcagtcgctggtgtcgccgggcagc
tgcctggaggacttccgcgccacgcccttcatcgagtgcaacggcgcgcgcggcacctgc
cactacttcgccaacaagtacagcttctggctgaccaccatccccgagcggagcttccag
agcgcgcccgcggccgacacgctcaaggccggcctcatccgcacgcacatcagccgctgc
caggtgtgcatgaagaacctgtga
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