Perognathus longimembris pacificus (Pacific pocket mouse): 125348195
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Entry
125348195 CDS
T08928
Symbol
Lmo7
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
125348195 (Lmo7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125348195 (Lmo7)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125348195 (Lmo7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ
LIM
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
125348195
NCBI-ProteinID:
XP_048197186
LinkDB
All DBs
Position
3:complement(22264671..22443116)
Genome browser
AA seq
1690 aa
AA seq
DB search
MEEAEADCSGAFAEARRWVEAVTKKNFQTKDFRASLENGILLCDLINKLKPGIIKKINRL
STPIAGLDNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYW
LGRKAQSNPCYHGPYLNLKAFENLLGQALTKALEDSSCLNRSGRDSGYSDFWCSDRGEFL
APPSRHKREDSFESLDSLGSRSLTSCSSDITLRGGRDGCESDTDSELTFRMQDYNKDDMS
YRRISAIEPKSALPFNRFLPNKSRQPSYVPAPLRKKKPDKNEDNRRSWASPVYTEADGTF
SSNQRKSWGTKVEKWPAVRGTSVSSCYLEEEEERITSLPNIVKDDLYLRRLSPVMPNPGN
SFDQFLPKCWAPEDVSWKRIKKENYKPWYKEFQGFRRNSDSEEEDSGCDRSSIIFSRLQK
AEHRLDNNCPRPSLLLELATKWAIKSRDTHAASRTSAASSEHSQFLLLQALQTYSDDILS
ETSVRLDPTSGPRLITRRKNLPHAPGLRRDDLEMPALDPDLENDDFFVRKTGAFHANPCV
IRAFEDFRRFSEQDDHVERDIILQYREGDLVLPDLEKDDMIVRRIPAQKKEVPLSGAPDR
YQPVPFPEPWTLPPDIQAKFLCVLERTCPPKEKSPSCRILVPSYRQKKDDMLTRKIQSWT
LGTSVPPMSFTPGPCSEADLQKWEAIREASRLRHKKRLMVERLFQKIYGENGSKSMSDVS
AEDVQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKNRRKSYTSDLQKKKEEREEIEKQ
ALEKADRSSKTFKEMLQDRESRNQKSTVTSSRRLYSSDDISNDEGLVPSLTQSEASYQSQ
RAEEEGTPSPTEFPKEASTSFLKTQDSTATETGLPSLPPAEEQHSAPLSSQHSLTTRMEV
TRVSASASLPRSYQKTDTARLTSVVTPRPFGTQSRGISSLPRSYTMDDGWKYNGDVEGTK
KTQHNLASTPAPKPDTSQLVSSVSSEMDAATGEGVTRLPSPESPFSSLSQEEAAAPKATL
SSTSGPDLLSDSGEARSSPQREVSKSQDQFSDMRININQTPGNSLDFGFTVKWDYSGIFV
ASVEPGGPAEISQLQVDDEIIALNNTKFSYNDTKEWEETMANARETGNLVMDIRRYGKSG
SPETKWIDTTSGIYNSDKSLSLSMTTDFSESLQSPYTEPKEINGIHDESNTLESKASEPI
SLKNLKRRSQFFEQGSSDSVVPDLPVPTLSAPSRWAWDQEEERKRQERWQKEQDRLLQEK
YQREQEKLREEWQRAKQEAERENSKYLNEELMVLNSNNISLTTRQPTVSSWEAPWSEGSK
SSDREGSRAGEQERSHQEEEVVHEDPRQKLQEQLILEQERKLKEQQQIQEEQERKQHEAI
EAQKQQAERERERETSVKIYQYRRPVDSYDIPKREEESSGLLPSDRSKSRSTTELDNYPT
NNGSSKHLDQIGSASFSQKSSRKDPVPSGAELERQQILQEMRKRTSLHNDNSWIRQRSSS
VNKEPICLPGMMRRGESLDNLDSPRSGSWRQSPWHSQPAGVYASSSVQDFSRPPPQLLST
SNRAYMRNPSSGVPPPSAGPVKTTITGMVTAQSPTPRSHSPSTLQSGSQLRNRSVSGKRT
CSYCNSILGKGAAMIIESLGLCYHLHCFKCVSCGCDLGGSSSGAEVRIRNHQLYCNDCYL
RFKSGRPTAM
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggccgaggccgactgctccggggcgttcgccgaggctcggagatgggtagag
gcagtaacgaagaagaattttcaaacaaaggactttcgagcttccctagaaaatggcatt
ctgttgtgtgatttgattaataaacttaaacctggcatcattaagaagatcaatagactg
tccacccccatagcaggtttggataatataaacgtttttttgaaagcttgtgaacagatt
ggtctgaaagaagctcagcttttccaccctggggatctacaggatttatcaaatagagtc
actgtcaagcaagaagagactgacaggagagtgaaaaatgttttgataaccttatactgg
ctgggaagaaaagcacaaagcaacccttgctatcatggtccctatcttaatttgaaagca
tttgagaatcttttaggacaagctctgactaaggcgcttgaagactccagctgcctgaac
agaagtggccgtgacagtggctacagtgatttctggtgttctgaccgaggagaatttctt
gctcctccaagtagacataagagggaagattcctttgagagcttggactcgttgggctcc
cggtcactgaccagctgctcctcagatatcacactgagaggggggcgagacggttgtgaa
agtgatacagattcagaattgacattcagaatgcaggattataacaaagatgacatgtct
tatcggaggatttcagctattgaaccaaagtctgctttaccattcaaccgatttttaccc
aacaaaagtagacagccatcctatgtaccagcacccttgaggaagaaaaagccagacaaa
aatgaggataaccgaagaagctgggcaagccccgtctacacagaagcagatggaacattc
tcaagtaaccagaggaaatcttggggcaccaaggtggagaaatggccagcagtcagaggg
acgtcagtctcctcttgttatttggaagaggaagaagaaaggatcaccagcttacccaac
attgtaaaggatgatctgtatctgcgaaggctaagtccagtcatgccaaatccagggaat
tcttttgatcagtttcttcctaaatgctgggccccagaagatgtgagctggaaaaggata
aaaaaggagaattataaaccatggtataaagaatttcagggattcagaaggaattcagac
tctgaggaggaggattcaggctgtgacagaagctccatcatttttagtagattacaaaaa
gcagagcataggttagacaacaactgcccaagaccttcactcttgctggaacttgccacc
aaatgggccataaagtcacgggacactcacgcagccagcaggaccagtgctgcttcgtct
gagcacagtcagtttctattacttcaggctctccaaacatactctgacgacatcttgtct
gaaacaagtgtcagacttgatcccacttccggcccaaggctcatcacacgcagaaagaac
ctccctcatgcaccaggcttaagaagagatgaccttgagatgccggccttggatcctgat
ttagaaaatgatgatttctttgttagaaaaacgggggctttccatgcaaatccctgtgtt
attcgagcttttgaagactttagaaggttctctgagcaagatgatcatgtagagcgagat
ataattttgcaatatagagaaggtgacctcgtacttccagatttagaaaaagatgatatg
attgttcgccgaattccagcacagaagaaagaagtgcctctgtctggggccccggataga
taccagccagtcccttttcctgagccctggactctgcctccagacattcaagcaaaattc
ctctgtgtactggaaaggacatgtccacccaaagagaaaagtcccagctgtagaatatta
gttccgtcctatcggcagaagaaggacgatatgctgactcgcaagattcagtcttggacc
ctgggaacttccgttcctcccatgagttttacccctggtccctgcagtgaggccgatttg
cagaagtgggaggctatccgagaggccagccgacttaggcacaagaaacgactgatggtt
gagagactctttcaaaaaatttatggtgagaacgggagtaagtccatgagcgatgtcagt
gcagaagatgttcaaaatctgcgtcagctgcggtatgaggagatgcagaaaataaaatcc
cagttaaaagaacaagatcagaaatggcaggatgaccttgcaaaatggaaaaatcgccgg
aaaagttacacttcagatttgcagaagaaaaaggaagagagggaagaaattgaaaagcag
gcactggagaaggcagacagaagctccaagacgtttaaggagatgctgcaggaccgggaa
tctcgaaatcaaaagtctacagttacatcgagcaggagattgtattcttctgatgatata
tcgaatgatgaagggctcgttccttcactgactcagtcggaagccagttaccagagccag
agagcagaagaggagggaacaccttctcctactgaatttcctaaagaagcgtctacaagt
ttcctgaagacacaggacagtacagccactgagacagggcttccttctctacccccggca
gaagaacagcactcagcccctttgtcttctcagcattcactgactacacgaatggaggtg
actcgagtttcagcttcagcttctctccccagaagctaccagaaaactgatacagccagg
ttaacatctgtggtcacaccgagaccttttggcactcagtcaaggggaatctcatcactt
cccagatcttacacgatggatgatggttggaagtataatggggatgtggaaggaactaag
aaaactcagcacaatttggccagcactcctgccccgaagcctgacaccagccagcttgtt
tccagcgtgtccagcgaaatggatgcagccacgggagaaggtgtgacgaggctgccttct
cccgaatctcccttctcatctctctcccaagaggaggctgccgctcctaaagccacactc
tcctccacgtctggtcccgatttactatctgactctggggaagcgagaagctcaccacag
agagaggtctcaaagtcccaggatcagttcagcgatatgagaatcaacatcaaccagacg
cctgggaacagtcttgactttgggtttacagtaaaatgggattattctgggatcttcgtg
gcatcagttgaaccaggtggccctgcagagatttctcagctgcaggtagatgatgaaatt
attgctctcaacaacaccaagttttcatacaacgatacaaaagagtgggaggaaaccatg
gcgaatgctcgagaaactggaaacctagtgatggatatcagacgctatggaaagtctggt
tcacccgaaacaaagtggattgatacaacctctggaatttataactcggacaagtcttta
agtctatccatgacaactgatttctctgaaagccttcagagtccttatactgaaccaaaa
gaaatcaatggaattcatgatgaaagcaacactttagaatcaaaagcatctgagcctatt
tctttgaaaaacttaaaaagacgatcacaattttttgaacaaggaagctctgattctgtg
gttcctgatcttcctgttccaactctcagtgccccgagtcgctgggcatgggatcaagaa
gaggagcgaaagcggcaggagaggtggcagaaggagcaggaccgcctgctgcaggaaaaa
taccaacgtgagcaggagaaactgagggaagagtggcaaagggctaaacaggaggctgag
agagagaattctaagtatttgaatgaggagctgatggtcctgaactcaaacaacatttct
ctgaccacacggcagcccactgtttccagctgggaagccccatggagtgaaggctccaag
tcctcagacagggaaggaagccgagcaggagagcaggagaggagccaccaggaagaggag
gtggttcacgaggatccaagacagaagctgcaggaacaactcattcttgagcaagagagg
aaactgaaggagcagcaacagatacaggaagagcaggagcggaagcagcatgaggccatt
gaagcacagaagcagcaggcagagagagagagagagagggagacttcggtcaaaatatac
cagtataggagacctgttgattcttatgatataccaaagagagaggaagaatcttcaggc
ttgcttcctagtgacaggagtaaatccagatcaactactgaactggataactaccctaca
aacaatggaagcagcaaacatttagaccaaattggaagcgctagcttttcacagaagagc
tccaggaaggatccagtcccctcaggggcagagctggagagacagcaaatcctccaggaa
atgagaaagagaacctccctccacaatgacaacagctggatccggcagcgcagctccagt
gtgaataaagagccaatttgtctgcctgggatgatgagaagaggcgagtctctagataac
ctggactcccccaggtcgggttcttggagacagtccccatggcacagtcagcccgccggg
gtctacgcctcctcctctgttcaggacttcagtcgcccaccacctcagctgctgtccacg
tcaaaccgtgcctacatgcgaaacccctcatccggtgtgccccctccttctgctggccca
gtgaagaccaccatcacgggcatggtgaccgcacagtcccccaccccacgcagccattcc
ccttccactttacagtcggggtctcagcttcgcaacaggtcagtgagtgggaagcgcacg
tgctcctactgtaatagcattctgggcaaaggagccgccatgatcatcgaatccctgggg
ctttgttaccatttacattgttttaagtgcgtgtcctgtgggtgtgacctcggaggctca
tcatcgggagccgaagtcagaatcagaaaccaccaactgtactgcaacgactgctatctc
agattcaaatccggacggccaactgccatgtga
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integrated database retrieval system
