Perognathus longimembris pacificus (Pacific pocket mouse): 125348218
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Entry
125348218 CDS
T08928
Symbol
Pcdh9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125348218 (Pcdh9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
plop01009
]
125348218 (Pcdh9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125348218 (Pcdh9)
Protein phosphatases and associated proteins [BR:
plop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125348218 (Pcdh9)
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Protocadherins
125348218 (Pcdh9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RCR
Big_9
V_ATPase_I
EphA2_TM
MAP17
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
125348218
NCBI-ProteinID:
XP_048197221
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All DBs
Position
3:27903004..28724834
Genome browser
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGATYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYVFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDDDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
NIPVTPQKCPSSAGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
NEGHFNNGSHVTDIPLANLKSYKQAGGAMERPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattct
gccatagctcaagaacttatttacacgattagagaagaattgcctgaaaatgtacccata
ggaaacataccaaaggacttgaacatttctcacatcaatgcagccacagggaccagtgcc
agccttgtctacagactggtttctaaagctggagatgcccctttggtgaaagtatccagc
agcactggagagattttcaccacctctaatagaatagaccgagaaaaactctgtgcagga
gctacttatgctgaggagaatgagtgtttctttgaacttgaggtggtgatcctccccaat
gactttttccggctgatcaaaataaagataattgtcaaggataccaatgataatgccccc
atgtttccatctcctgtcatcaatatttccatccccgaaaacactttgatcaacagtcgc
tttccgattccatcagcaacagatcctgacacaggcttcaatggtgtacagcattatgaa
ttgctaaatgggcagagtgtttttggactagatattgtggaaactccagagggagagaag
tggccgcaattgattgttcagcaaaacttggatagagaacagaaagatacctatgtgatg
aaaatcaaagtggaggatggaggcactccacagaaatccagcacagccatactgcaggtc
acagtaagtgatgtcaatgacaacaggccagtgtttaaagagggtcaagtggaggtgcat
attcctgagaatgctcctgtggggacctctgtcattcagctccatgctactgatgcagac
attgggagcaatgctgaaatcagatatgtgtttggtgcccaggtcgcccctgcaaccaaa
agactctttgctttaaataacactactgggctgattacagttcaaaggtccttagacaga
gaagagacagccattcacaaagtgaccgtgctggccagtgatggcagctccacacctgcc
cgagccacagtgaccatcaatgtcactgatgtaaacgataaccctcccaacatcgacctc
aggtacattataagtcccatcaatggcacggtgtatttatctgagaaagatcctgtcaat
acaaagattgccctcattacagtttcagataaggacacagatgtgaatggcaaagtgatc
tgttttattgagagagaggtcccatttcatttgaaggcagtctatgacaaccagtatttg
ttagagacctcttccttgttggactatgagggcaccaaagaattcagctttaaaatagtt
gcctctgattctgggaagcccagcttgaatcagactgcccttgtaagggttaagcttgaa
gatgaaaatgacaacccaccaattttcaaccagcctgtaattgagctgtcagtttctgaa
aacaaccgacgtgggttatacttaacaactattagtgccacagatgacgatagcgggaaa
aatgcagacattgtttatcagcttggaccgaatgcctccttctttgatctggaccgaaag
acaggagttttgacagcctccagagtctttgacagagaggagcaagaacgattcattttt
acagtcactgccagggacaatgggacccctcccctgcaaagccaagcagccgtgatagtg
acagttctggatgagaatgacaacagccctaagtttactcataaccattttcaatttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtgatcacagtgacagatgcagat
gcgggggaaaataaagcggtgactctttccattctaaatgacaatgagaattttgtgttg
gatccctactcaggagtcataaagtcaaatgtctcctttgatagagagcagcagagttct
tacacttttgatgtcaaagccacggatggagggcaaccacctcgttcctcgactgcaaaa
gttactatcaatgtcatggatgtcaatgacaacagcccggtggtcatttctccaccgtcg
aatacttcttttaagttggtgcccctctcggccattcctgggtctgtggtggcggaagtt
tttgccgtggatatcgacacgggaatgaacgcagaactcaagtataccatagtcagtggc
aacaacaaagggttatttcggattgatccagtcacaggtaacatcactctggaagagaag
ccggcacccaccgatgtgggtttgcaccgtttggtggtcaatatcagtgacctggggtac
cctaagtctctgcacacactcgtgctcgtgttcctgtacgtcaacgacaccgcgggaaac
gcctcctatatctacgacttgatccgcaggactatggagacacccttggacaggaacata
ggggacagtagccaaccctatcaaaacgaggattatctcaccatcatgatcgccattgtc
gccggagccatggtggtcatcgtggtgatcttcgtcactgttctggtacgctgtcgccat
gcctcacggttcaaagccgctcagaggagcaagcaaggggccgagtggatgtctcccaac
caggagaacaaacaaaacaagaagaagaagcggaagaaaaggaagtctcccaagagctct
cttctgaactttgtgaccattgaagagtctaaacctgatgatgccgttcacgaacctatc
aatgggacaatcagccttccagctgaactggaggaacaaagtataggaagatttgactgg
ggtccagcacctccaaccaccttcaagcctaacagccctgacctggccaagcactacaaa
tctgcctctccacagcctgcttttcatctcaaaccagacactccagtttctgtgaaaaag
caccacgtgattcaggagctccctttggacaacacctttgtcgggggctgtgacacccta
tccaaacgctcctcaactagttcagaccacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggtcctttacacaccagacagtgtaattcacacagcaaaagtgac
aatatccctgtcactcctcagaaatgtcccagctctgccggtttccacattcaggagaat
gaagaaagtcattacgagtctcagcgtcgtgttacctttcacctccccgatggctcccag
gaaagctgcagtgacagtggtcttggagaccacgagccggtgggtagtggaaccctgatc
tcacaccctcttcctctggttcagccacaggacgaattctacgaccaggcctctccggac
aaaaggaccgaagcagacgggaactctgaccccaactctgatggacctctgggtcctcgt
ggattagctgaagctacggagatgtgcactcaagagtgcttggtgttgggtcattcggat
aattgctggatgcctcctggcctgggtccataccaacaccccaaatctcctctttcaact
tttgcaccccagaaagaatgggtcaagaaagataagctggtgaacgggcataccctgacc
agagcctggaaagaagacagcaacagaaaccagttcaatgaccgtaagcagtatggctcc
aacgaaggccatttcaataatggcagccatgtgacagacattcctctggcaaatctgaag
tcctataagcaagcaggaggcgctatggagaggcctaaggagcaccaactctag
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