Perognathus longimembris pacificus (Pacific pocket mouse): 125348221
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Entry
125348221 CDS
T08928
Symbol
Pcdh17
Name
(RefSeq) protocadherin-17 isoform X1
KO
K16499
protocadherin delta 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125348221 (Pcdh17)
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Protocadherins
125348221 (Pcdh17)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_C_2
Cadherin_4
NUC153
PepSY
Motif
Other DBs
NCBI-GeneID:
125348221
NCBI-ProteinID:
XP_048197228
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All DBs
Position
3:complement(34161895..34252617)
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AA seq
1160 aa
AA seq
DB search
MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGKDARLQPGLPPAERGGSGGRS
KSGSYRVLENSAPHLLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIK
VEIQDINDNAPSFPSDQIEMDISENAAPGTRFPLTSAHDPDAGENGLRTYLLTRDDHGLF
ALDVKSRGDGTKFPELVIQKALDREQQNHHTLVLTALDGGEPPRSATVQINVKVIDSNDN
SPVFEAPSYLVELPENAPLGTVVIDLNATDADEGPNGEVLYSFSSYVPDRVRELFSIDPK
TGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAHCKVTVKLIDRNDNAPSIGFVSVRQG
ALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGGTGGGGGLGGPGGSVPFKLEENYD
NFYTVVTDRPLDRETQDEYNVTIIARDGGSPPLNSTKSFAVKILDENDNPPRFTKGLYVL
QVHENNIPGEYLGSVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAIYALRS
FNYEQTKAFEFKVLAKDSGAPAHLESNATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPR
NAGLGYLVSTVRALDSDFGESGRLTYEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPVV
ELVVKVTDHGKPTLSAVAKLIIRSVSGSLPEGVPRVNGEQHHWDVSLPLIVTLSTISIIL
LAAMITIAVKCKRENKEIRTYNCRIAEYSHPQLGGGKGKKKKINKNDIMLVQSEVEERNA
MNVMNVVSSPSLATSPMYFDYQTRLPLSSPRSEVMYLKPASNNLTVPQGHAGCHTSFTGQ
GTNSSETPATRMSIIQTDNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQAD
SDQDTNKGSCCDMSVREALKMKTTSTKSQPLEQEPEECINCTDECRVLGHSDRCWMPQFP
AANQAENADYRTNLFVPTVEANVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYL
KAKRALSPLLQEVPSASSSPTKACIEPCTSTKGSLDVCEAKPGALAEASSQYLPTDSQYL
SPSKQPRDPPFMASDQMARVFADVHSRASRDSGEMGPVLEPPDHPNRDLGRESVDAEEVV
REIDKLLQDCRGNDPVAVRK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtacctatccatctgttgctgctttcttctctgggcccctgccctgacactgaaaaac
ctgaactattccgtgccagaggagcaaggggccggcacggtcatcggcaatatcggcaag
gatgctcgactgcagccaggacttccgccggctgaaagaggcggcagcggcgggagaagc
aagtccggcagctaccgggtgctggagaactcggcgccgcacctgctggacgtggacgcc
gacagcgggctcctctacaccaagcagcgcatagaccgtgagtccctgtgccgccacaat
gccaaatgtcagctgtccctggaagtgttcgccaacgacaaggagatctgcatgatcaag
gtagagatccaggacattaacgacaatgccccctcgttcccctccgatcagatcgagatg
gatatctctgagaacgcagccccaggcacccgcttccccctgaccagcgcacacgaccca
gacgcaggtgagaacgggctccgcacctatctgctcacgcgcgatgaccacggcctcttt
gccctggacgtcaagtcccgcggcgacggcacaaagttccccgaattggtcatccagaaa
gcattagaccgcgagcaacagaaccaccacacgctcgtgctgacggccctggatgggggc
gagccgccgcgttccgccacggtgcagatcaacgtgaaagtgatcgactccaacgacaac
agtccggtgttcgaggcgccttcctacttggtggaattgcccgaaaacgccccgctgggc
accgtggtcatcgatctcaacgccaccgacgccgatgagggtcccaatggggaagtgctt
tactccttcagcagctacgtgcccgaccgcgtgcgggagctcttctccatcgaccccaag
acgggcctgatccgtgtgaaggggaacctggactacgaggagaacgggatgctcgagatc
gacgtgcaagctcgagacctgggacccaaccccatcccggcccactgcaaggtcacggtc
aagctcatcgaccgcaacgacaacgcgccgtccatcggtttcgtctccgtgcgccagggg
gcgctgagcgaggcagccccgcctggcactgtcatcgccctggtccgggtcaccgaccga
gactcgggcaagaacggacagctgcagtgccgggtcctgggtggaggagggactggcggc
ggcggtggcttgggcggaccggggggttctgtccccttcaaactcgaagagaactacgac
aacttctacacggtggtgaccgaccgtcccctcgaccgggagactcaggacgagtacaac
gtgaccatcattgcgcgggacgggggctcgcctccgctcaactccaccaagtccttcgcg
gtcaagattctggatgaaaacgacaaccctccccgcttcaccaaagggctctatgtgctc
caagtgcacgagaataacattccaggagagtacctgggctcagtgctcgcgcaggatccc
gacttgggccaaaatggcaccgtgtcctattccattctgccctcgcacatcggcgatgtg
tccatttacacttacgtgtccgtcaaccccaccaacggggccatctacgctctgcgctcc
tttaactatgaacagactaaagccttcgagttcaaggtgctggcgaaggactccggggcg
cccgcgcacctggagagcaatgccacggtgcgagtgaccgtgttagacgtgaatgacaat
gcgccggtgatcgtgctgcccaccctgcagaacgacaccgccgagctgcaagtcccgcgc
aacgccggcctgggctacctggtgagcaccgtgcgcgccctggacagcgacttcggcgag
agcgggcgcctcacctacgaaattgtggatggcaacgacgaccacctgtttgagatcgat
ccatccagcggggagatccgcactctgcaccccttctgggaagacgtgacccccgtggtg
gaactggtggtgaaggtgacagaccacggcaagcccacactgtccgcggtggccaagctc
attatacgctctgtgagtggctcgctgccagagggggtaccccgggtgaacggggagcag
caccactgggacgtgtcgctgccgcttattgtgactctgagcacaatctccatcatcctc
ctagcggccatgatcaccatcgctgtgaagtgcaagcgggaaaacaaggagatccgcact
tacaactgccgcatagccgagtatagccacccgcagctgggcgggggcaagggcaagaag
aagaagatcaacaaaaatgatatcatgctggtgcagagcgaggtggaggagaggaacgcc
atgaacgtcatgaacgtggtgagcagtccctccctggccacctcccccatgtactttgac
taccaaacccgcctgcccctcagctcgcccaggtcagaggtgatgtatcttaaaccagcc
tccaacaacctgacggtcccgcagggacacgcaggctgccacaccagcttcaccggacaa
gggactaattcgagcgagacccctgccactcggatgtccataattcagacagacaatttt
cccgcagagcccaattacatgggcagcaggcagcagtttgttcaaagtagctccacgttt
aaggacccagaaagagccagcctgagagacagtgggcacggggacagtgatcaggctgac
agtgaccaagacacaaacaaaggctcctgctgtgacatgtctgttagggaggcactcaag
atgaaaactacttcaactaaaagccaaccacttgaacaagaaccagaagagtgcatcaat
tgcacagatgaatgccgagtgcttggtcattctgataggtgttggatgccacagttccct
gcagccaatcaagctgaaaatgcagattaccgcacaaatctctttgtacccacagtggaa
gctaatgtggagactgagacttacgaaactgtgaatcccactgggaaaaagactttttgt
acatttgggaaagacaagcgagagcacactattctcattgccaatgtcaaaccttattta
aaagccaaacgtgccctgagccctctcctccaagaggtcccctcagcatccagcagtcca
acaaaggcatgcatcgagccttgcacctctaccaaaggctccctggatgtttgtgaagca
aaacccggagccctggccgaagcaagcagtcagtacttgcccactgacagtcaatatctg
tcccccagtaagcaaccgagagaccctcctttcatggcttccgaccagatggcaagagtc
ttcgccgatgtgcattccagagccagccgggattccggagagatgggtcctgtcctggag
ccacctgatcaccccaaccgggatctgggcagagaatccgtggatgcagaggaagttgtg
agagaaattgataagcttttgcaggactgccgagggaatgaccccgtcgctgtgagaaaa
tga
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