Perognathus longimembris pacificus (Pacific pocket mouse): 125348339
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Entry
125348339 CDS
T08928
Symbol
Trpc4
Name
(RefSeq) short transient receptor potential channel 4
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04360
Axon guidance
plop04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
125348339 (Trpc4)
09158 Development and regeneration
04360 Axon guidance
125348339 (Trpc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
plop04040
]
125348339 (Trpc4)
Ion channels [BR:
plop04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125348339 (Trpc4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
Motif
Other DBs
NCBI-GeneID:
125348339
NCBI-ProteinID:
XP_048197423
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All DBs
Position
3:49014812..49210936
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AA seq
977 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKSYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSVFGLINLYVTNVKAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLVKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIRDAKTEEGLTEENFKELKQDISSFRFEVLGLLRGSKLSTIQSASATKESPNSADSDEK
SDSEGNSKDKKKNLSLFDLTTLIHPRSAAIASERRTISNGSALAVQGAPREKQRKVNFVA
DIKHFGLFHRRPKQATAEPSTAPIFSVSEEVARQQAAGPSESSIALGSRGLGARGDPSLP
GLSEQCVLVDHRERNSDSLGLQVGKRVCAFTSEKVVVEDTVPIIPKEQHAQEEDGSLDYD
LHLQDTVSHEDYVTTRL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctattacaaaagaaacgtgaatgccccttatcgagaccgcattcctcta
aggatagtccgagctgaatctgaactttctccctcagaaaaatcctacctgaatgcagtg
gaaaagggagactatgcaagcgtgaagaagtccttagaggaagctgagatttattttaaa
attaatattaactgcattgatcctcttggaagaactgctctcctcatagcaattgaaaat
gagaacctagagctcattgagctgctcttaagcttcaatgtctacgtgggagatgctttg
ttacatgccatcagaaaagaagtggtgggagctgttgagctgttgctgaaccacaaaaag
ccaagtggagaaaaacaggtgcctcccatacttctcgataagcagttctccgaattcaca
ccggacattacaccaatcattttggcagctcatacaaataattatgagataataaaactt
ttggtccaaaaaggcgtctccgtgccccgaccccacgaggtccgttgtaactgcgtggaa
tgtgtctccagttcagacgtggacagcctccgccactcccggtcccgcctcaacatctac
aaggccttggccagtccttctctcatcgccctgtccagtgaagaccccttcctcacagcc
tttcagctgagctgggagcttcaggaactgagcaaggtagaaaatgagttcaagtcagag
tatgaggagctgtccagacagtgcaaacaatttgccaaggacctgttggatcagaccaga
agctccagagaactggaaatcattctcaattaccgagacgacaatagtctgattgaagaa
caaagtggaaatgatctcgcaagactaaaattagccattaagtaccgccaaaaagagttt
gttgcccagcccaattgtcaacagcttctcgcctctcgctggtacgatgagttcccagga
tggaggagaagacactgggcagtgaagatggtgacatgtttcataataggactgcttttc
cccgtcttctctgtgtgctacctgatagctcctaaaagcccgcttggactgttcatcaga
aagccatttatcaagtttatctgccacacagcctcctatttgacctttttgttcctgctg
ctgcttgcctctcaacacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtcgagtggatgatattaccgtgggtcctgggttttatatggggagaaattaaacag
atgtgggatggtggccttcaagattatatccatgattggtggaatctaatggatttcgtg
atgaactccctatatttagcaacaatttctttgaagatcgttgcatttgtaaagtacagt
gctcttaatccacgagagtcctgggacatgtggcaccccaccctggtggctgaggctttg
tttgctattgcaaatatcttcagttccctgcgtctgatttcactgttcacggcgaattct
cacctgggacctctgcagatatctctgggcagaatgctcttggatattttgaaattcctc
ttcatctactgcctggtgttgctagcctttgcaaatggcttgaatcagttgtacttttat
tatgaagaaacaaagggtttaagctgcaaaggcatacggtgtgaaaaacagaataatgca
ttctccacgttgtttgaaacacttcaatccctattttggtcagtatttggtctcatcaat
ttatacgtgaccaatgtcaaagcacagcatgaattcactgagtttgtaggtgccaccatg
tttgggacatacaatgtcatctctctggttgtcctactcaacatgttaatagcgatgatg
aataattcttatcaactaattgctgatcatgcagatatagagtggaaatttgcacgaaca
aagctgtggatgagctactttgaagaaggaggtactctgcctactccctttaatgtcatt
ccaagccctaagtccctgtggtacctagtcaaatggatatggacacacctgtgcaagaaa
aagatgagaagaaagccagaaagttttggaacaatagggagacgagctgctgataatttg
agaagacatcaccaatatcaagaagttatgaggaacctggtgaagagatacgtggcagcc
atgattagagatgctaaaacggaagaagggctgacagaagagaactttaaggaactaaag
caagacatctctagcttccgcttcgaagtcctggggttgctaagagggagcaaactgtcc
accatccaatctgccagcgccaccaaggagtcccccaactccgccgactcggacgagaag
agcgatagcgaaggtaacagcaaggacaagaaaaagaacctcagcctcttcgacctgact
accctgatccacccgaggtccgcagccatcgcctcagagagacgcaccatcagtaatggc
tctgccctggcggtgcagggggcccccagggagaagcagaggaaagtgaactttgtggct
gacatcaaacacttcgggttgtttcacagacgcccgaagcaagccacggcggagcccagc
acagctcccatcttctccgtgtccgaagaagtggctcgtcagcaggcagcgggaccctcg
gagagcagcattgcgctgggatcgcgaggcctgggggccaggggggaccccagccttccc
ggcctcagtgaacagtgtgtgttagtggaccacagagaacggaattcggactcgttgggt
ctgcaagtgggcaagagggtttgtgcgttcacatccgagaaggtggtggtggaagacacg
gttcccatcataccaaaggagcagcacgcgcaagaggaggatggcagcctcgactacgac
ttgcacctgcaggacacggtcagccacgaagactatgtgaccacgagattgtga
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