Perognathus longimembris pacificus (Pacific pocket mouse): 125348466
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Entry
125348466 CDS
T08928
Symbol
Ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
plop03037
]
125348466 (Ift88)
Cilium and associated proteins [BR:
plop03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
125348466 (Ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_19
TPR_8
TPR_7
TPR_6
TPR_14
TPR_16
ANAPC3
TPR_11
TPR_17
TPR_10
ARM_TT21_4th
TPR_CcmH_CycH
ARM_TT21_5th
TPR-S
TPR_21
ARM_TT21_N
TPR_15
HEAT_Nup120
ARM_TT21_C
HAT_PRP39_C
DUF6584
RPN7
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
125348466
NCBI-ProteinID:
XP_048197651
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Position
3:64132899..64227117
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AA seq
825 aa
AA seq
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MMQNVHLAPETDEDDLYSGYNDYNPTYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTA
VTRPIATGYGSKTSLVSSLGRPMTGAIQDGVTRPMTAVRAAGFTKAALRGSAFDPLGQSR
GPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRMERVLVR
QREQVTTPENINLDLTYSVLFNLASQYSANEMYTEALNTYQVIVKNKMFSNAGILKVNMG
NIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGVTFIKTGQYSDAINSFEHIMS
MAPNLKAGYNLILSYFAIGDREKMKKAFQKLIAVPLEIDEDEKYISPSDDPHTNLLIEAI
KNDHLRQMERERKAMAEKYIMTAAKLIAPVIETSFAVGYDWCVEVVKASQYVELANDLEI
NKAITYLRQRDFNQAVDTLKMLEKKDSRVKSAAATNLSGLYFLQNEFSQASSYADLAVNS
DRYNPSALTNKGNTVFANGDHEKAAEFYKEALRNDSSCTEALYNLGLTYKKLNRLDEALD
CFLKLQAILRNDAQVLYQIANVHELMKDPSQAIEWLMQLISVVPTDSRVLAKLGELYDSE
GDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLM
VASCFRRSGNYQKALDTYKDIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKKLEKM
KEMKEQRIKSGRDGSGGSRGKREGSTGSDSGQNSSANSKGERLSAKLRTLPGTNEPYESS
SNKEIDVSYVDPLGPQIERPKTAAKKRGDEDDFADEELGDDLLPE
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaaatgtgcacctggcaccggagacagatgaagatgatctatattctggttat
aatgactacaacccaacctatgatactgaggaattggaaaacgatacaggttttcagcaa
gcagtgagaactagtcatggcagaagacctcccgtaactgctaaaataccaagcacggca
gttactagacctatagctactggatatgggtccaagacatctctggtatcatccttggga
agaccaatgacaggggctatccaggatggagttactcgacctatgacagcagtgagagca
gctggttttaccaaagcagcattgagaggctctgcatttgatccccttggtcagtcacgg
gggccggctcctcccttggaagccaagaatgaagatagtccagaagaaaagattagacag
ttagagaagaaagtaaatgagttggtagaagaaagctgtattgccaatagttgtggagac
ttaaaattggctttagaaaaagcaaaagatgcagggagaatggaaagagtcttggtgaga
caacgagaacaagttacaactccagagaatatcaatctggatttaacttactcagttctt
ttcaacttggccagtcagtattcagctaatgaaatgtatactgaggcattaaacacgtat
caagttatagtgaaaaataagatgttcagtaatgcaggaatattgaaagtgaatatggga
aatatttatttaaagcaaagaaattactccaaagctatcaagttctaccgaatggcccta
gatcaaatcccaagtgtccataaagaaatgaggataaaaataatgcagaacattggtgtt
acatttattaaaaccggtcagtattcagatgccattaattcgtttgaacacataatgagc
atggcaccaaatctgaaggcaggctacaacctaatcctcagttattttgccattggagac
cgagaaaaaatgaagaaggccttccagaaattgattgctgttccgttagaaatcgatgaa
gatgagaaatacatttcaccaagtgatgatccccatactaacttactgattgaagcaata
aaaaatgaccatctcaggcaaatggaacgtgagaggaaagctatggcagaaaaatatatc
atgacagctgcaaaactcattgcgcctgtaattgagacatcctttgctgtaggttatgac
tggtgtgtggaagtggtgaaagcttctcaatatgtagagctagccaatgatctggaaata
aacaaagcaattacatacttaaggcaaagggattttaaccaagctgtagataccttaaaa
atgttagaaaaaaaagacagtagagtgaaaagtgcagctgcaaccaacctctcaggcctg
tattttctgcaaaatgaattttcccaagccagcagctatgcagatttagccgtgaactct
gacaggtataacccatcagctcttactaataaagggaacacagtttttgcaaatggtgat
cacgagaaggccgctgaattctacaaagaggctctaagaaacgattcttcttgtactgaa
gcactttacaaccttggccttacttataagaagctaaaccggctagatgaggctttggac
tgtttcctgaaacttcaagcaatcttgaggaatgatgcccaagttctttatcaaatagca
aatgtacatgaattaatgaaagatcccagtcaagctattgaatggttgatgcagctgatc
agcgttgttccaacagattccagagttctagccaaactgggagaattgtacgacagtgaa
ggagacaagtcacaggcattccaatattactatgagtcatacaggtatttcccttctaac
attgaagtcattgagtggcttggagcatattacattgacactcagttttgtgaaaaagcc
attcagtactttgaaagagcttctcttatacagcccacgcaagtgaaatggcagctgatg
gttgctagttgttttagaagaagtggtaactaccagaaagcattagatacttacaaagat
attcacagaaaatttccagaaaatgttgaatgtctgcgtttcttggttcgtctctgcaca
gatattggattaaaagaagttcaagaatatgccacaaaactcaagaagttggaaaaaatg
aaagaaatgaaggaacagcgcatcaagtccggcagagatggcagtgggggctcccgaggc
aaacgggaggggagcaccggcagtgatagtggccagaacagtagtgccaatagtaaaggt
gaacgactaagtgccaaactcagaactttacccgggacaaatgaaccttatgaaagtagc
agtaacaaagaaatagatgtttcctacgtggatccactcggcccgcagatcgaaagacca
aaaactgctgccaagaaaagaggtgatgaggatgattttgctgatgaggaactaggagac
gatttgcttccagaataa
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