Perognathus longimembris pacificus (Pacific pocket mouse): 125348692
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Entry
125348692 CDS
T08928
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125348692 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125348692 (Xab2)
03041 Spliceosome [BR:
plop03041
]
125348692 (Xab2)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125348692 (Xab2)
Spliceosome [BR:
plop03041
]
Complex B
Other components
Prp19-related factors
125348692 (Xab2)
Complex C
125348692 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
TPR_MalT
ARM_TT21_C
TPR_1
Motif
Other DBs
NCBI-GeneID:
125348692
NCBI-ProteinID:
XP_048198076
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All DBs
Position
3:70052031..70060609
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARLILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDQALRLLRKATALPARRAEYFDSSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLC
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDHPSRAQNKILFVRSDASREELAELTQQLNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKDD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactctcgcggcccgaacggccggaccttgttttcgaggaagag
gatcttccttatgaagaggaaatcatgcgaaaccagttttcagtcaaatgttggctccgc
tatattgagtttaaacagggagcccccaaaccccggctcaatcagctttatgagcgggcg
ctcaagctgctcccctgcagctataaactctggtaccgttacctgaaggcacgtcgggca
caggtgaaacaccgttgtgtgactgatcctgcctatgaagacgtcaacaactgccacgag
agggccttcgtgttcatgcacaagatgccccgtctatggctagattactgccagttcctc
atggaccagggacgagtcacacacacacgccgtaccttcgaccgtgccctcagggcactg
cccatcacgcagcactcacgcatttggcctctgtacctacgcttcctacgctcccacccg
ctgcctgagactgccgtgagaggctaccggcgcttcctcaagctgagtcctgagagtgct
gaggagtatatcgagtacctcaagtcgagtgaccggctggatgaggctgcccagcgcctg
gccaccgtggtgaatgatgagcgatttgtgtccaaggctggcaagtccaactaccagctg
tggcacgagttgtgtgacctcatctcccagaacccagacaaggtgcagtctctcaatgtg
gacgccatcatacgcggaggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcactggctgactactacatccgcagtggtcacttcgagaaggcccgggacgtgtatgag
gaggccatccgcacagtgatgactgtgcgggacttcacacaagtatttgatagctacgcc
caatttgaggaaagcatgattgcagccaagatggagacagcctcggagctggggcgagag
gaagaagatgatgtagacctggagctgcgcttggcccgcttcgagcagctcatcagccgg
cggcccttgctgctcaacagcgtcctgctgcgccagaacccacaccacgtgcatgagtgg
cacaagcgcgtggccctgcaccagggccgtccccgggaaatcatcaacacatacacggag
gccgtgcagactgtggaccccttcaaggccacgggcaagccccacacattgtgggtcgcc
tttgccaagttttatgaggataatgggcagctggacgacgcccgtctgatcctagagaaa
gccaccaaagtaaacttcaagcaggttgatgacctggccagtgtgtggtgccagtgcggt
gagctggagctccggcatgagaattatgaccaggccttgcggcttcttcgaaaggccaca
gcactgcctgcccgccgggccgagtactttgacagctctgaacctgtgcagaaccgagtg
tataagtctctgaaagtgtggtcaatgcttgccgacctggaggagagtctaggcaccttc
cagtccaccaaggctgtgtacgaccgcatcctggacctgcgcatcgccaccccacagatt
gtcatcaactatgccatgttcctagaggagcacaagtactttgaggagagcttcaaggca
tatgaacgtggcatctcgctgttcaaatggcctaacgtgtcggacatctggagcacctac
ctgaccaagttcatcgcccgctatgggggccgaaagctggagcgggcacgtgacctgttt
gagcaggcgctggatggctgcccccccaaatatgccaagaccctgtacctgctgtacgcg
cagctggaggaggagtggggcctggcccggcatgccatggccgtgtatgaccgtgccaca
cgggctgtggaacccgcccagcagtatgacatgttcaacatctacatcaagcgggctgca
gaaatctatggcgtcacgcacacacgtagtatctaccagaaagccattgaggtgctgtgt
gatgagcatgcccgggaaatgtgcttgcgctttgctgacatggagtgcaagcttggcgag
atcgaccgcgcccgcgccatctacagcttctgctcccagatctgcgacccccggaccact
ggggcattctggcagacatggaaggactttgaggtccggcatggcaacgaagacaccatc
agggaaatgctgcggatccgccgcagtgtacaggcgacctacaacacgcaggtcaacttc
atggcctctcagatgctcaaggtgtcaggcagcgccacgggcactgtctctgatctggcc
cctgggcagagtggcatggatgacatgaagcttctagaacagagagctgagcaacttgca
gctgaggctgagcgggaccatccctcacgggcccagaacaagatcctctttgtgaggagt
gatgcgtcccgagaggagctagctgagctgacccagcaactcaaccccgaggagatccag
ctgggtgaagacgaggatgaggacgagatggacctggagcccaatgaggtccggctagag
cagcagagcgtgccagctgcagtgttcgggagcctgaaagatgactga
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