Perognathus longimembris pacificus (Pacific pocket mouse): 125348747
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Entry
125348747 CDS
T08928
Symbol
Atg4d
Name
(RefSeq) cysteine protease ATG4D
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04136
Autophagy - other
plop04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125348747 (Atg4d)
04136 Autophagy - other
125348747 (Atg4d)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
plop01002
]
125348747 (Atg4d)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125348747 (Atg4d)
03029 Mitochondrial biogenesis [BR:
plop03029
]
125348747 (Atg4d)
Peptidases and inhibitors [BR:
plop01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
125348747 (Atg4d)
Membrane trafficking [BR:
plop04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
125348747 (Atg4d)
Mitochondrial biogenesis [BR:
plop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125348747 (Atg4d)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
YIEGIA_cap
Motif
Other DBs
NCBI-GeneID:
125348747
NCBI-ProteinID:
XP_048198226
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All DBs
Position
3:72321052..72331013
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AA seq
473 aa
AA seq
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MNSVSPAAAQYRSGSPEDARRPEGRRPRGPRLPDPNGLGSSGAGPPALGSSGSAPVEPDE
VDKFKAKFLTAWNNVKYGWAVKSRTSFSKISSVHLCGRRYRFEGEGDIQRFQRDFVSRLW
LTYRRDFPPLAGGCLTSDCGWGCMLRTGQMMLAQGLLLHFLPRDWTWAEGSGLAPAELSA
SASPCRPRGPPRRLPSRWAHGAPELEQEHWHRQIVSWFADHPQAPFGLHRLVELGQSSGK
KAGDWYGPSLVAHILRKAVESCCEVTRLAVYVSQDCTVYKADVARLVARPDPTAEWKSVI
ILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQ
PTVDVSQADFPLESFHCTSPRKMAFAKMDPSCTIGFYARDRKEFERLCSELTRVLSSSSA
SERYPMFTVAEGHAQDLGLDDLCTQPAPPMPCLPRPGPLLKAKRPSSEDFVFL
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaactccgtgtccccggccgccgcgcagtaccggagcgggagcccggaggacgcgcgc
cggcccgaggggcgcaggccacggggtccccggctcccggatcccaacggcctggggtcc
tctggggccgggccccccgccctgggctcgtccgggtccgccccagtggagccagacgag
gtggacaagttcaaagccaagttcttgaccgcttggaacaacgtcaagtacggttgggca
gttaaaagccggaccagttttagtaagatctccagcgttcacctctgtggccgccgttat
cgttttgaaggcgagggtgacatccagcgtttccaacgggacttcgtgtcccgcctgtgg
ctcacctatcgcagggacttcccacctctggctggaggctgcctgacctccgactgtggc
tggggatgcatgttacgcacgggtcagatgatgctcgcccagggcctgctactccacttc
ctgcccagagactggacgtgggcagagggctcaggcctggccccggctgagctgtctgca
tctgcctctccgtgccggccacgtgggcctccccgccggctgccctctcgctgggcccat
ggtgcccctgagctggagcaggaacattggcaccggcagattgtgtcctggttcgctgat
cacccccaggccccttttggcctccatcggctggtggagcttgggcagagctcaggcaag
aaagcgggggactggtatggcccgtcgctggtggcccacattctgaggaaagctgtggag
agctgctgcgaggtcacccgcctggcggtgtacgtgtctcaggactgtacagtgtacaag
gcagatgtggcacgcctggtggccaggcccgaccccacggccgagtggaagtctgtcatc
atcctggtacccgtgcgtctgggtggcgagacgctgaaccctgtatatgtgccctgcgtg
aaggagctactccggtctgaactgtgcctgggtatcatggggggcaaaccccgccactcc
ctctacttcattggctaccaggatgacttcctactctatctggacccccactactgtcag
cccactgtggatgtcagtcaggctgacttccccctagagtctttccactgcacctcaccc
cgcaagatggccttcgccaagatggaccccagctgcaccatagggttctacgccagagac
aggaaggagtttgagaggctctgctctgaactgaccagggtcctcagctcctcctcagcc
tcggagcgctatcccatgttcaccgtggccgagggccatgcgcaagacctcggcctggac
gacctctgcacccagcctgccccgcccatgccctgtctgccccgcccagggcccctcctc
aaggccaagcggccaagctcagaggactttgtgtttttatag
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