Perognathus longimembris pacificus (Pacific pocket mouse): 125348922
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Entry
125348922 CDS
T08928
Symbol
Lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125348922 (Lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
125348922 (Lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125348922 (Lsm4)
03041 Spliceosome [BR:
plop03041
]
125348922 (Lsm4)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125348922 (Lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
125348922 (Lsm4)
Spliceosome [BR:
plop03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125348922 (Lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125348922
NCBI-ProteinID:
XP_048198535
LinkDB
All DBs
Position
3:complement(75934843..75939417)
Genome browser
AA seq
139 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGLGSAGRGVFGGRGRGGI
PGTGRGQPEKKPGRQAGKQ
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctgtcattgctgaagacagctcagaaccaccccatgctggtggagctgaag
aatggggagacatataatgggcacctggtgagctgcgacaactggatgaacatcaacctg
cgggaggtgatctgcacgtcacgggatggggacaagttctggcgcatgcccgagtgctac
atccggggcagcaccatcaagtatctgcgcatcccggatgagatcatcgacatggtgaag
gaggaggtggtggccaagggccgcgggcgtggtggcctacagcagcagaagcagcagaag
ggtcgtggcctgggcagtgcgggccgaggtgtgtttgggggccggggccgtggcgggatc
ccaggcacgggccgcgggcagccggagaagaagccaggcaggcaggcaggcaagcagtga
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integrated database retrieval system
