Perognathus longimembris pacificus (Pacific pocket mouse): 125348974
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Entry
125348974 CDS
T08928
Symbol
Nwd1
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
plop04990
]
125348974 (Nwd1)
Domain-containing proteins not elsewhere classified [BR:
plop04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
125348974 (Nwd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_SCAP
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_DCAF4
NACHT
AAA_16
Beta-prop_Vps41
Beta-prop_NWD2_C
CNH
Beta-prop_LRRK2
Beta-prop_IFT122_1st
AAA_22
DUF4062
Beta-prop_SPT8
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
125348974
NCBI-ProteinID:
XP_048198662
LinkDB
All DBs
Position
3:76919413..76948636
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AA seq
1564 aa
AA seq
DB search
MDTEREALLANAYPEVQAFCQKHGLMFEVVDLRWGIQDTEAPDHTMTELCLEELSRCQET
SIGPTFIALLGDRYGPCPVPGLIKEQEWEALRAPLTARPQDLELVARRFQRDENAVPPTY
VLQEPDVGEAHGPEEASLTSVLRGGAQEAWRLGLLNQEQWHRYHRSVLEWELDSGVLRPG
AAQGATVFLREISDLHKHILDHCALQAVDRLPDGCLDTDAQSLLHRLKGRLAEAHPEVVK
AHPVPWSRDLLNPKNKAHARYLRELSEQFVARAHHQILEGLRERDAAPLPLAWLYQELHH
HLRQGAEAAATFCGRLDLLARLGRRLRADDGRPHAPLVLFGSPGVGKTALLCKLAGDTAG
LLGRRTVTALRVLGSSGRSMDACQLVQSLAFQVCLAFGLPPPPAQVLARRSCLVQFLHAL
LHTVARRNCESLVLILDNVDGLDTIGPSGGLPWLPARCPPRVHLILSVCSGQHGVLDTLR
RTLRDPDVFFEVPPLTASQGQDMVGRLLAAAGRTLSPVQRAALWACLPECGHPWRLRLAF
EEARRWASFTVPAPLAATAPEAAHQLCRRLEDTHGQLLVAHVLGYLAASRYGLSEAELKD
VLSLDEVVLCHVYQAWTPPSRQVLRFPPLLWVRLRRDLGHCLARRPTDGCTLLAIAHRQL
AEVVAVRYLSGPEKAKRHSVLADFFSGAWSQGTKKLITLPLVGRPLNLDRKVAAQPLWFS
DSVANVRRLQELPRHLLLSGRTQELKQDVLGNMSWLVCRGLSAGLEALLDDFDLCTPHLR
CPEVSLIREAIQLCCPAVELRGMEKSILYTELLARLHFFSKSHPMLVGQLCQQAQSWLRA
CPHPVLVPLAGFLQPPGVPLRATLTGCHKGITAMAWSQEEQRLVVGTHDGVVAVWDVEQQ
HPVHFLPGHTGEVWCVQVFAQGTRAISASKDRTLCLWDLLSGHQQLTIWDGGSVNSLTPQ
TRSLHVDEAKRVVYLTSGSKISAWGLETAELLFRILGEASDPWLCASMLAAPTRLLTVSW
AGVVSLWNAASGELQGKQRLSSVQGETPLCAAALHKQGTVVTGFSNGSVSLISTKGDRLL
EKLPEAVRLVEVSEDGSLLAAGFGKSVRIFLADSQGFHRFMATDLEHEDVVETAVFGPKN
NLIVTGSRDALIQVWSLSEQGVLLGLLDGLGAPLSMLIRAGALVVGASPQSSTFRAWDVT
RMRQPRACAPFLDRTGITALSHNGSYVYFPSIGDRNQVTIWDLAEGEQRGALDASSEVRC
LEVAEQSKLLFTGLASGTVLVFPLNSTQDVLCIPPPEARKAVHCMALSKKEDRLAVAYDH
IILVLNVGPGDPCPVVDGPTFTFYTQLPETITAVAILGDSRVAYGMTNGDLFLYECATSK
VFPLEAHRSRVSSVEVSHREQLAVSSSEDGLLCLWDLRTCQWKLEMSYTSSFSRGVQCVC
FSQDDKYLFSAWKDGSIVVWRVLDGTLLTVQFVHAMVNRIIPTSNGFMAPTRQGRLIRVR
FQCLAARASPQDALQNFQKAVWMVKTRRREELAADAGALQDPGSEAALETEPKSNKNSQV
CLLL
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atggacacggagagagaggccctgctggccaacgcctaccccgaagtacaagccttctgc
cagaagcacggcctgatgtttgaggttgttgatctgaggtggggtattcaggacacggag
gccccggaccacacgatgactgaactctgcctggaggaactcagccggtgtcaggagaca
tccatagggccaactttcattgccctgctgggtgaccgctatggcccctgtcctgtccct
gggctgatcaaggagcaggagtgggaggcgctgagggccccgctgactgctaggcctcaa
gacctggagctggtggctcggcgcttccagagggatgagaatgctgtgccccccacctac
gtgctgcaggaaccggatgttggggaggcccatgggcctgaggaggcctccctgacctct
gtccttcgtgggggtgcacaggaggcctggaggctgggcctcctcaaccaggagcagtgg
catcgctaccatcgctcagtcctcgagtgggagctggacagcggggtgctgcgccctggg
gcggcgcagggggccaccgtgttcctgcgtgagatctcggacctccacaaacacatcctg
gaccactgcgcgctacaggcggtggaccgcctgcccgacggctgcctggacactgacgcc
cagagccttctccaccgcctcaaggggcgcctggcggaggcgcaccccgaagtcgtcaag
gcccatcccgtgccgtggagccgggacctgctgaacccgaagaacaaggcgcacgcgcgc
tacctccgggagctcagcgagcagttcgtggccagggcccatcaccagatcctggagggg
ctgcgggagcgggacgccgccccgctccccctggcctggctctaccaggagctgcaccac
cacctgcgccagggcgccgaggccgccgccaccttctgcggccgcctggacctgctagcc
cggctggggcggcggctgcgggccgacgatgggcggccccacgcgccccttgtgctgttt
gggtccccgggcgtggggaagaccgccctgctgtgcaagctggcaggggacacggcgggg
ctgttggggcgcaggacggtcaccgcgctgcgggtgctggggtcgtccgggaggagcatg
gacgcctgccagctcgtccagtccctggccttccaggtgtgcctggccttcgggctgccc
ccgccacccgcccaggtcctggcccggcgcagctgcctggtgcagtttcttcacgcactg
ctccacaccgtggcgcggagaaactgcgagtccttggtgctcatcctggataacgtcgac
ggcctggacacgatcggcccttctggggggctcccctggctgcccgcccgctgtcccccc
agagtgcacctcatcctgtctgtctgctcggggcagcacggcgttctggacaccctgcgg
cggacgctgcgagaccccgacgtcttcttcgaggtgcctccgctgactgccagccagggg
caggacatggtggggcggctgctggcggccgccgggaggacgctgagccccgtgcagagg
gccgcgctctgggcctgcctcccggagtgcggccacccctggcggctgaggctggccttc
gaggaggcccgcaggtgggcctccttcaccgtgcccgctcccctggccgccaccgccccc
gaggccgcacaccagctctgccgccgcctggaggacacgcacggccagctcctggtggcc
cacgtcctgggctacctcgctgcgtcccggtatggcctctctgaagccgagctgaaggat
gtgctgtccctggatgaggttgtgctgtgccatgtgtaccaggcctggacgccacccagc
cgccaggtgctgcgcttcccaccattgctctgggtgcggctgcggcgagacctgggccac
tgcctggccaggcggcccacagatggctgcaccctcctcgccattgcccacaggcagctg
gctgaggtggtggcagtgcgctacttgtcaggacctgagaaagccaagaggcacagtgtc
ctggcagacttcttctcgggcgcctggagccagggcaccaaaaagctcatcaccctgccg
cttgtggggaggcctctgaatctggaccgcaaggtggctgctcagccgctgtggttctcc
gactccgtggccaacgtgcggaggctgcaggagctgccccgacacctgctgctctcgggc
cgcacgcaggagctgaagcaggacgtgctggggaacatgagctggctggtgtgccggggg
ctctcagcgggcctggaggccctgctggatgactttgacctctgtaccccacatctccgc
tgccccgaggttagtctgatccgagaggccatccagctctgctgcccagctgtggagctc
cgaggcatggagaagagcatcctgtacacagagctcctggcccggctccatttcttctcc
aagtcccaccccatgttggtggggcagctgtgccagcaggcccagagctggctccgtgca
tgcccgcaccctgtgctggtacccctggccgggttcctgcagccccccggagtacccctg
cgggccaccctcaccggctgtcacaagggcatcaccgccatggcgtggagccaggaggag
cagcggctggtggttggcacgcacgatggtgtggtggccgtgtgggacgtggagcagcag
cacccggtccacttcctccccgggcacacaggtgaggtgtggtgcgtgcaggtgttcgcc
caagggacccgcgccatctctgcctcaaaggaccgcacactgtgcctgtgggacttactg
tcgggccaccagcaacttaccatttgggatggaggctcagtcaactccctgactcctcag
acccggagccttcacgtagacgaagcaaagcgagttgtgtacttaacgtcagggtcaaag
atcagtgcgtggggcctggagacggcagagctgctgttcagaatcctgggcgaggcctcg
gacccctggctgtgtgcgtccatgctggctgcccccacccgcctgctgactgtctcctgg
gccggtgtggtcagcctgtggaacgcggcctcgggcgagctccagggcaagcagcgtctg
agcagtgtccaaggagagacccccttgtgtgcagcagccctccacaagcagggcaccgtg
gtcactggctttagcaacggctctgtctctctgatatccacaaagggagacagattgcta
gagaagcttccagaagctgtgagactggtggaggtgtctgaagatggatctctcctggcg
gcaggttttggaaaatctgtgcggatctttctggcggactcacagggttttcaccgattc
atggctactgatctggaacatgaggatgtggtagagacagctgtttttggtcctaagaat
aacctgattgtcactgggtcccgggatgcactcattcaggtgtggagcctgtctgagcag
ggcgtcctgctgggcctcctagacggcctgggggccccgctcagcatgctgatccgggct
ggggccttggtggttggggcctcaccccagtcttcgacattcagagcctgggatgtcacc
cgcatgcggcagcccagggcctgtgcccccttcctggaccgcacagggataacagccttg
tcccacaatggaagctatgtttacttccccagcatcggggacagaaaccaagtcaccatc
tgggacttggcggaaggtgagcagcgcggtgcactggatgcatccagtgaagtgcggtgt
ctggaggtagctgagcaaagcaagctcctgttcaccggcctggcttcggggactgtgctg
gtgttccccctgaactccacacaggacgtcttgtgcatccctccccccgaggcccggaaa
gccgtccactgcatggctctgagcaagaaggaggaccggctggctgtggcctatgaccac
atcatcctcgtcctgaatgttggccctggggacccctgccctgtggtcgacgggcccaca
ttcaccttctacacccagctccctgagaccatcactgctgtggctatcctgggtgactcc
cgcgtggcctacggcatgaccaacggtgacctgtttctgtacgagtgtgccacttccaaa
gtgttcccattggaggcccacaggagcagagtctcgagtgtggaggtcagccaccgggag
cagctggctgtcagcagctctgaggatggcctgctgtgtctgtgggacttgaggacctgc
cagtggaagctcgagatgagttacacaagctccttcagcaggggcgtccagtgcgtgtgc
ttctcccaagatgacaagtacctgttctcggcctggaaggatggctcaattgttgtgtgg
agagtattggacggcactctgctgactgtccagtttgtccacgccatggtgaacaggatc
atccctacctccaatggcttcatggcccccaccaggcagggccggctcatccgggtgcgg
ttccagtgcctggctgccagggcctcaccgcaggatgccctgcagaacttccagaaggct
gtgtggatggtgaagacccggaggagagaagagctggcagctgatgcaggagcactccag
gaccccggatccgaggcagccctggaaactgagccaaagtccaacaagaactcccaagtg
tgcctgctgctgtag
DBGET
integrated database retrieval system
