Perognathus longimembris pacificus (Pacific pocket mouse): 125349121
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Entry
125349121 CDS
T08928
Symbol
Atxn2
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop05014
Amyotrophic lateral sclerosis
plop05017
Spinocerebellar ataxia
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125349121 (Atxn2)
05017 Spinocerebellar ataxia
125349121 (Atxn2)
05022 Pathways of neurodegeneration - multiple diseases
125349121 (Atxn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125349121 (Atxn2)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125349121 (Atxn2)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
125349121
NCBI-ProteinID:
XP_048198890
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Position
3:85678551..85756985
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AA seq
1164 aa
AA seq
DB search
MSLKPQQQQPPQQPPPPPPPAAASARKPGGGPGLLTSPAAAPAPSSVSSSSAAASTSSSS
AAVGAGGGRPGLGRGRNSNKGLPQSSISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIY
EGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARR
DAFTDSAISAKVNGEHKEKDLEPWDGGELTASEDLEALENDVSNGWDPNDMFRYNEENYG
VVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEK
YTAVQRNSSDREGHSMNTRENKYIPPGQRNREVLSWGSGRQNSPRMGQPGSGSMPSRSAS
HTSEFNPSSGADQRVVNGGVPWPSPCPSPSSRPPSRYQSGPTSLPPRAATPTRPPSRPPS
RPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRASIASGLEFV
SHNPPSEAAAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSVGNPPSGPVLTSP
QAGTTPAEAVAMPIPAASPTPASPAANRAGTPSAEAKDSRLQDQRQNSPARNKENMKAVE
TAPSFSKAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQLLNKNREGEKPRD
LLKDKIEPICKDSFIENSSSNCTSGSSKPSSPSASPSILSSAEHRRGPEVTSQGVQTSSP
ACKQEKDDKDEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVG
HQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQ
DQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSP
VLQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYVCLSKAKITCAEECTIGQKLACP
KLPYNKETSPSFYFAISTGSLAQQYAHPSATLHPHPPHPQPSATPTGQQQSQHGGSHPAP
SPVQHHQHQAAQALHLASPQQQPAIYHAGLAPTPPAMTPASNTQSPQNSFPTAQQTVFTI
HPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQP
IPVSTTAHFPYMTHPSVQAHHQQL
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaagccccagcagcagcagccgccgcagcagccgccgccgccaccgccgccc
gcggccgccagtgcccgcaagcccggcggcggtcccggcctcctcacgtcgcccgccgcc
gcgccggccccgtcctcggtctcctcgtcctcggccgcggcctccacgtcctcctcctcc
gcggcggtcggcgcaggcggagggcggcccggcttgggcagaggtcgaaatagtaacaaa
ggactgcctcagtcatcgatctcttttgacggaatctatgcaaatatgcggatggttcat
atacttacatcagttgttggatccaaatgtgaagtacaagtgaagaacggaggtatatat
gaaggagtttttaaaacatacagtcccaagtgtgatttggtacttgatgctgcacatgag
aaaagtacagaatccagttcggggccaaaacgtgaagaaataatggagagtattttgttc
aaatgttcagattttgttgtggtacagtttaaagatatggactccagttatgcaagaaga
gatgctttcactgactctgctatcagtgctaaagtgaatggtgaacacaaggaaaaggac
ctggaaccctgggatggtggggagctcacagccagtgaggacctggaggctttggaaaat
gatgtttctaatgggtgggaccccaatgatatgtttcgatacaatgaagaaaattatggt
gtggtgtctacgtatgacagcagtttatcttcatacacggtgcctctagaaagggataat
tcagaagaatttttaaaaagggaagcaagggcaaaccagttagcagaagaaattgagtct
agtgctcagtataaagctcgtgtggctctggaaaatgatgacaggagtgaggaagaaaaa
tatacagcagttcagagaaactccagtgaccgagaggggcacagcatgaataccagggaa
aataaatatattcctcctggacaaagaaatagagaagtcttgtcgtggggaagtgggaga
cagaattcgccacgcatgggccagcctggttcaggctccatgccgtccagatctgcttct
cacacctcagagttcaacccaagttctggcgcagaccaaagagtagttaatggaggtgtt
ccctggccatcgccttgcccatctccttcctctcgcccaccttctcgctaccagtcaggt
cccacctctcttccacctcgggcagccacccctacacggccgccctccaggcccccctcg
cggccatccagacccccgtctcacccctctgctcatggttctccagctcctgtctctact
atgcctaaacgcatgtcttcagaagggcctcccaggatgtctccgaaggcccagcgacac
ccccgaaaccacagagtttctgctgggagggcctccatagccagcggcctagaatttgta
tcccacaacccacccagtgaagcagcagctcctcccgtggccaggaccagtccagctggg
ggaacgtggtcgtcagtggtcagtggggttccaagattatctccaaaaactcacagaccc
aggtctccccgacagaacagtgttggaaatcctcccagtgggcctgtgctcacttctccc
caagctggcaccaccccagccgaagcagttgccatgcccattcctgctgcgtctcctaca
cctgccagccccgccgccaatagagctgggaccccatctgctgaggctaaagattccagg
cttcaagatcagagacagaactctccagcaaggaataaagaaaacatgaaggctgtagag
acagcgcctagcttctcaaaagctgaaaataaaggtatatcaccagttgtttctgaacac
aggaaacagattgatgatttaaagaagtttaagaatgattttaggttacagccaagttcc
acatcggagtcaatggatcaactactaaacaaaaatagagagggagaaaaaccaagggat
ttgctcaaagacaaaattgaacccatttgtaaggactctttcattgaaaatagcagcagc
aactgtaccagcggcagcagcaagcctagcagccccagcgcctccccttctatcctcagc
agtgcagagcacaggagggggccagaggttacctcccaaggggtgcagacttccagtcca
gcatgtaaacaagaaaaagatgataaggacgagaagaaagatgcagccgagcaagttagg
aaatctacattgaatcccaatgcaaaggagttcaaccctcgatccttttctcagccaaag
ccttctaccaccccaacttcacctcgacctcaagcacaacctagcccctctatggtgggc
catcaacagccaactccagtttatacccagcctgtttgttttgcaccaaacatgatgtat
ccagtccctgtgagtccgggtgtgcaacctttatacccaatacccatgacgcccatgcca
gtgaatcaagccaagacctatagagcaggtaaagtaccaaacatgccccaacaacgacag
gaccagcatcatcagagcaccatgatgcatccggcctcggcggcaggcccgcccatcgtg
gccaccccgccagcctactccactcagtatgtggcctacagccctcagcagtttccaaat
cagccccttgttcagcacgtgccacattaccagtctcagcaccctcatgtctatagtcct
gtactacagggtaatgctaggatgatggcaccaccaacacatgcacagcctggtttagtg
tcgtcttcagcaactcagtacggggctcatgagcagacgcatgccatgtatgtgtgtctc
agcaaggcaaaaattacttgtgcagaagagtgcaccatcggccagaaacttgcatgtccc
aaattaccgtacaacaaggagacaagcccttctttctactttgccatttccacaggctcc
ctcgctcagcagtatgcgcaccccagcgctaccctgcacccccatcctccacaccctcag
ccctcagccacccctacgggacagcagcagagccagcatggcggaagtcacccagcaccc
agtcctgttcagcatcatcagcaccaggccgcccaggctctccacctggccagtccacag
caacagccagccatttaccatgcagggctggcgcccaccccacctgccatgacaccggcc
tccaacacacagtcgccacagaacagtttcccaacagcacaacagacggtgttcaccatc
catccctctcacgtccagccggcatacaccaatccaccacacatggcccacgtacctcag
gctcatgtacagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgcta
atgacgacacagccacctggcggtccccaggccgccctcgctcaaagtgcactacagccc
attccagtctcgacaacagcgcatttcccctatatgacgcacccttcagtgcaagcccac
caccagcagctgtaa
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