Perognathus longimembris pacificus (Pacific pocket mouse): 125349202
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Entry
125349202 CDS
T08928
Symbol
Ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125349202 (Ddx55)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125349202 (Ddx55)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
Helicases
125349202 (Ddx55)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
125349202
NCBI-ProteinID:
XP_048199070
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All DBs
Position
3:87776695..87788801
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AA seq
600 aa
AA seq
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MEHVTEGAWESLPVPLHPRVLGALRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKT
LAFVIPALEILLRREEKLKKKQVGAIIITPTRELAIQIDEVLSHFTKHFPQLSQILWIGG
RNPGEDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMG
FEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAPSSTWKTPS
RLENFYMVCKADEKFNQLVHFLRHHKQEKHLVFFSTCACVEYYGKALEVLVSGTQVLCIH
GKMKHKRNKIFLDFRKLHSGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTA
RIGHGGSALVFLLPMEESYTNFLAINQKCPLQEVSLQKNVANLLPDLKALALADRAMFEK
GMRAFVSHIQAYAKHECSLIFRLKDLDFASLARGFALLKMPKMPELRGKQFPEFVPVDIN
TDTIPFKDKIREKKRQKLLEQQKKEKTENEGKRKFIKNKAWSKQKAKKERKKKMSEKRKK
EEGSDIEDKDMEELLNDTRLLKKLKKGKITEEEFEKGLLTSGKRTTKMADLGVSDLEDEC
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggagcatgtgacggaaggcgcctgggagtcgctcccggtgccactgcacccgcgggtt
ctgggagcgctgcgggagctgggcttcccgtacatgacaccagtgcagtctgccaccatc
cctctgttcatgaaaaataaagacgtggcagcagaggcggtcacaggtagtggcaaaaca
ctggcctttgtcatccctgctctggaaatccttctgagaagggaggagaagttgaagaaa
aagcaggtgggagccatcatcatcacccccacccgcgagctggctattcagattgatgag
gtcctgtcacacttcaccaagcacttcccgcagctcagtcagattctctggattggaggc
aggaaccccggagaagacgtggagaggtttaagcagcatggtgggaacatcattgtggca
actccaggccgcctggaggacatgttccggaggaaggccgagggcctggacctggccagc
tgtgtgaggtccctggatgtcctggtactcgatgaggctgacagacttctagacatgggg
tttgaggcaagcataaacaccatcctggagttcctgccaaagcagaggagaacaggcctt
ttctccgctacacagacacaggaggtggagaatttggtgcgagccggcctgcggaaccct
gtccgcatctcggtgaaggagaagggtgtggctcccagcagcacctggaagacgccctcc
cgcctagagaacttctacatggtatgtaaggcagatgaaaaatttaatcagctggtacat
tttcttcgacatcacaagcaggagaaacatctggttttcttcagtacttgcgcctgtgtg
gagtactatgggaaggctctggaggtgctggtgagtggcacgcaggttctgtgcattcat
ggcaagatgaagcacaagcgcaacaagatcttcctggacttccgcaagctacacagtggg
attttggtctgcaccgatgtgatggctcggggcatcgacattcctgaagtccactgggtt
ctgcagtacgaccctcccagcagcgccagtgcctttgtgcaccgctgcggccgcacagcg
cgcattggccatggtggcagtgctctggtgttcctgctgcctatggaagagtcgtacacc
aatttcctcgccatcaaccaaaagtgccccctgcaggaggtgagtctgcagaagaacgtg
gccaacctgctgccagaccttaaggccctggccctggccgacagagctatgtttgaaaag
ggcatgagagccttcgtgtcccacatccaggcctacgccaagcacgagtgcagtctcatc
ttcaggctaaaggatcttgactttgccagccttgcccgaggttttgccttgctcaagatg
cctaagatgccagaactcaggggaaagcagtttccagagtttgtgcctgtggacattaat
acagacacaattccatttaaagataaaattagagaaaaaaaaagacagaaactattggag
caacaaaaaaaagagaaaacagaaaatgaagggaaacgaaaattcataaaaaacaaagca
tggtccaaacagaaagccaaaaaggaaaggaaaaaaaagatgagtgaaaaaaggaagaag
gaagagggctctgacattgaagataaggacatggaggaactccttaatgacacgaggctc
ttgaaaaaattaaaaaaaggcaaaatcactgaagaagaatttgagaaggggttgttgaca
agcggcaaaagaacaacgaagatggcagatttaggggtctctgatttggaagatgagtgc
tga
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