Perognathus longimembris pacificus (Pacific pocket mouse): 125349241
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Entry
125349241 CDS
T08928
Symbol
Pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03030
DNA replication
plop03410
Base excision repair
plop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125349241 (Pole)
03410 Base excision repair
125349241 (Pole)
03420 Nucleotide excision repair
125349241 (Pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plop03032
]
125349241 (Pole)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125349241 (Pole)
Enzymes [BR:
plop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
125349241 (Pole)
DNA replication proteins [BR:
plop03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
125349241 (Pole)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
125349241 (Pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
125349241
NCBI-ProteinID:
XP_048199166
LinkDB
All DBs
Position
3:complement(90672613..90720158)
Genome browser
AA seq
2288 aa
AA seq
DB search
MSTRGAMVLRNSGRRRTEPEVDGEASRDDGPSSSASALKRLERSQWTDKMDSRFGFERLK
EPGEKTGWLINMHPTEILDEDKRLVSAVDYYFIQDDGSRFKVALPYKPYFYIATRKGCER
EVSSFLSKKFQGKIAKVETVPKEDLDLPNHLVGLKRNYIRLSFHTVEDLVKVRKEISPAV
RKNREQDHASNAYTAMLSSVLQGGSVITDEEETSKKIADQLENIVDMREYDVPYHIRLSI
DLKIHVAHWYNVRYRGTAFPVEITRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIM
MISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEVHLIQRWFEHVQET
KPTVMVTYNGDFFDWPFVEARAAVHGLSMYQEIGFQKDSQGEYKAPQCIHMDCLRWVKRD
SYLPVGSHNLKAAAKAKLGYDPVELDPEDMCRMATEQPQTLATYSVSDAVATYYLYMKYV
HPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQEFNKLTEDGHVL
DSETYVGGHVEALESGVFRSDIPCRFRMNPAAFDFLLQRVEKTMRHAIEEEEKVPVEQAT
NFHEVCEQIKTKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAAC
DFNKPGANCQRKMAWQWRGEFMPASRSEYHRIQHQLESEKFPALFPDGPTRAFHELSREE
QAKYEKRRLADYCRKAYKKVHVTKVEERFTTICQRENSFYVDTVRAFRDRRYEFKGLHKV
WKKKLSAAMEMGDAAEVKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGI
VCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIQTTNAKKPKVTISYPG
AMLNIMVKEGFTNDQYQELAEPSSLTYITRSENSIFFEVDGPYLAMILPASKEEGKKLKK
RYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGSTLEEVYASVAKVADYWL
DVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGL
SCRYIISRKPEGSPVTERAIPLAIFQAEPTVRKHFLRKWLKSSSLQDFDIRTILDWDYYI
ERLGSAIQKIITIPAALQQVRNPVPRVKHPDWLHRKLLEKNDVYKQKKISDLFVLEGKRQ
VVAAQVTEGSPRASAPDMEDFGLTKQLHSAVPVATKRKRVLWESQQESQDLELTVPWKEI
LGQPPILGTTQEEWLVWLQFHKKKWQLQARQRLARRKRQRLELTEGTSRHGPIREGPVTG
LGSFLRKTARSILDLPWQIVQISETNQAGLFRLWAIIGNDLHCIKLNIPRVFYVNQRVAK
VEEGPSYRKVNRALPRSNMVYNLYEYSVPEDMYQEHINEINTELSAPDIEGVYETQVPLL
FRALVQLGCVCVVNKQLVRHLSGWEADTFALEHLEMRSLAQFSYLEPGSIRHIYLYHHSQ
GHKALFGVFIPSQSRASVFVLDTVRSNQMPSLSALYSAEHNLLLEKMGPELLPPPKHTFE
VRAETSLKTICRAIQRFLLAYKEERRGPTLIAVHSNWELRRLASEVPVLEEFPLVPVRVA
EKISYGVLDWQRHGARRMIRHYLNLDTCLSQAFEMSRYFHIPIGNLPEDISTFGSDLFFA
RHLQRHNHLLWLSPTSRPDLGGKEADDNRLVMEFDDRATVEINNSGCYSTVCVELDIQNL
AVNTILQSHHINDMEGAGSMGISFDVIQQASLEDMVTGNQPSNAPASYDETALCSSTFRI
LKSMVVGWVKEITQYHNIYADNQVMHFYRWLRSPCSLLHDPALHRTLHGMMKKLFLQLVA
EFKRLGSSVIYANFNRIILCTKKRRIEDAIAYVEYITNSIHSKEIFHSLAISFSRCWEFL
LWMDPSNYGGIKGKVPSSIHCGQQNSQAGEGAEDKQEDEEEEEEEEESVEESEVEELLEN
NWNILQFLPQAASCQSYFLMIVSAYIVAVYHSMKDELRRSAPGSTPVKRRGPSQFSQETE
AAAGALPGMITFSQDYVANELTQSFFTITQKIQKKITGSRNSTEPSEMFPVLPGSHLLLN
NPALEFIKYVCKVLSLDTNITNQVNKLSRDLLRLVDVGEFSEEAQFRDPCRSYVLPEMIC
HSCNFCRDLDLCKDSSFSQDGTVLPQWLCPNCQAAYDSAAIEAALVEALQRKLMAFTLQD
LICLKCHGVKEAHMPVYCSCAGDFALTIHTQIFMEQIGIFQNIARHYGMLYLQETLEWLL
QTGPLSKS
NT seq
6867 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcgcggtgccatggtcctgaggaacagcgggcggcggcgcacggagccggag
gtggacggcgaggccagccgggatgatggcccctcttcctcagcatctgcgctcaagcgc
ctggagaggagtcagtggacagacaagatggactcaaggtttggttttgagaggctgaag
gagcctggtgaaaagactggctggcttatcaatatgcaccctactgagattttagatgaa
gataaacgcctagtcagtgcagtggattactactttattcaagatgatgggagtagattt
aaggtggccttgccctataagccatatttctacattgcaactagaaagggttgtgagcga
gaagtttcatcttttctctccaagaagtttcagggtaaaattgccaaagtagaaactgtc
cccaaagaggacctggacctgccaaatcacttagtgggtttgaagcggaattacatcaga
ttgtcctttcacactgtggaagaccttgtcaaagtaaggaaggagatttcccctgctgtg
aggaagaaccgggagcaggaccatgccagcaatgcgtatacagcaatgctctccagtgtt
ctgcaagggggaagtgtaattactgatgaagaggaaacctctaagaaaatagctgaccaa
ttggaaaacatagtggacatgagagagtatgatgttccctaccatatccgcctttccatt
gatctcaagatccatgtggctcattggtacaacgtcagatatcggggaactgcttttcca
gtggaaattactcggcgtgatgaccttgttgaacgacctgaccctgtcgttttggcattt
gatattgagacaactaaactgcccctcaagtttcctgatgctgagacagaccagattatg
atgatctcctacatgattgatgggcagggctacctcatcactaatagggagattgtgtca
gaagatattgaagatttcgagtttacccctaagccagaatacgaagggcccttttgtgtc
ttcaatgaacctgatgaggtccatctaatccagagatggtttgaacatgtccaggagacc
aaacccactgtcatggtcacctacaatggtgatttttttgattggccatttgtggaagcc
agggcagcagttcacggcctgagcatgtaccaggagataggcttccagaaggacagccag
ggggaatataaggcaccacagtgcatccacatggactgcctcaggtgggtgaagagggac
agctaccttccagtgggcagtcataatctcaaggcagctgccaaggcaaagcttggctat
gaccctgtagaactggaccctgaggacatgtgccggatggccacggagcagccccagact
ctggccacttattcagtgtcagatgctgttgccacttactatctgtacatgaagtatgtc
catcccttcatattcgccctttgcaccattattcccatggaacctgatgaggtgcttcgg
aagggctccggcacactttgtgaggccttgctgatggtgcaggccttccatgccaacatc
atcttccccaacaagcaagagcaggagttcaacaagttaacagaggatggccatgtgctg
gattctgagacctatgttgggggccatgtggaagctctggaatctggtgtctttcgcagt
gacatcccctgtcgatttaggatgaatcctgctgcctttgacttcctgctgcagcgagtt
gaaaagaccatgcgtcatgccattgaggaagaggagaaggtgccagtggagcaagccacc
aactttcacgaggtgtgtgaacagattaagaccaagctcacttctctgaaggatgttcct
aaccgaattgagtgtccccttatctaccacctggatgtgggggccatgtaccccaacatt
atcctcacaaaccgcctgcagccctctgctatggtggatgaggccacctgcgcagcctgt
gacttcaacaagcctggagcaaactgccaaaggaagatggcctggcagtggaggggcgaa
ttcatgcctgccagtcgcagtgaataccatcggatccaacaccagctggagtcagagaag
ttccctgccctgttccctgacgggccaacacgggcctttcatgagctgtctcgtgaggaa
caggctaaatatgagaagcggagactggcagattattgccggaaagcttacaagaaagtc
catgtcaccaaggtggaggaacgcttcactaccatctgccagcgggaaaattccttctat
gtggacacagtgcgggccttccgggacaggcggtacgagttcaaagggctacacaaggtg
tggaaaaagaagctctcagcagccatggaaatgggcgatgcagctgaggtgaagcgctgc
aaaaatatggagatcctgtatgactcactgcaactggctcacaagtgcatcctgaactcc
ttctatggctacgtcatgcgcaagggtgctcgctggtactctatggagatggctggcatt
gtctgcttcacgggagccaacatcattacccaggcacgggagctgattgaacagattggg
aggcctttagaactggacacagatggaatatggtgtgttctgcccaatagctttccagaa
aattttgttatccagacaaccaatgcaaagaagcccaaggtgaccatttcctaccctgga
gccatgttaaacatcatggtcaaggaaggcttcaccaatgaccagtatcaggaactggca
gagccttcctcgctcacctatatcacacgctcagagaacagcatcttttttgaggttgat
ggaccctatcttgccatgatccttccggcctccaaggaagaaggaaagaaattaaagaaa
agatatgcggtattcaatgaagatggatccctggctgagctaaaaggctttgaggtcaaa
cgccgtggggagctacagctaattaaaattttccaatcttcagtgtttgaggccttcctc
aaaggtagtacactagaagaggtgtatgcctctgtagccaaggtggctgactactggctg
gacgtgctgtatagtaaggcagctaacatgcctgactcagagctgtttgagctgatctca
gaaaaccgttccatgtcccggaagctggaagattatggggagcaaaaatccacatccatc
agcacagcaaagcgtcttgctgagttccttggagaccagatggtcaaagatgcagggctg
agctgtcgctatatcatctcccgcaaacccgagggctctcctgttactgagagagccatc
ccacttgccatttttcaagcagagcccactgtgaggaaacactttcttcgaaaatggcta
aagagctcatcccttcaagattttgatatacggacaattctagactgggactactacatc
gaaagactggggagtgccatccagaagatcatcaccatccccgcagctctgcaacaggtg
agaaacccagtgcctcgtgtcaagcatccagattggctgcacagaaaactactggagaag
aacgatgtctacaagcagaagaaaattagtgacctctttgtccttgagggcaagagacag
gttgtggcggcccaggtcactgaaggcagcccaagggcaagtgctcccgatatggaggac
tttggtctcacaaagcaactccactcagcagttccagttgctactaagaggaagcgagtt
ctttgggagagccaacaggagtctcaggaccttgagctgactgttccctggaaggagatc
ttggggcagcctcctatcctcggaactactcaggaagaatggctggtctggcttcagttt
cacaagaagaaatggcagctacaggcccgacagcgcctcgcccgcaggaagagacagcgt
ctggaattgacagagggtacatcaaggcatggacccatccgagaggggcctgtcacaggg
ttggggagcttcttgcggaaaactgctcgcagcatcttggaccttccatggcagattgtg
cagatcagtgagaccaaccaggctggcttgttcagactatgggccatcatcggcaatgac
ttgcactgtatcaagctaaacatccctcgagtattctacgtgaaccagagggtggccaaa
gtggaggagggaccttcatatcgcaaggtaaatcgggctcttcctcgttccaacatggtc
tacaatctctatgagtattcagtaccggaagatatgtaccaagaacacatcaacgagatc
aacacagaattgtccgcaccagacatcgagggcgtgtatgagactcaggtcccattgctg
ttccgggctcttgtgcagctggggtgtgtatgtgtggtcaacaaacagctggtgaggcac
ctttcaggctgggaagctgacacttttgcccttgaacacctggagatgcgttctttggct
cagttcagctacctggaaccagggagtatccgccacatctacttgtaccaccactcacag
ggtcacaaagccctctttggagtcttcatcccctcacagagcagagcatctgtgtttgtg
ttggacactgttcgtagcaaccagatgcccagcctcagtgctttgtactcagcagagcac
aacctactgctagaaaagatgggccctgagctcctgcctccccccaaacatacttttgaa
gttcgggctgaaaccagcctgaagaccatctgtagagccattcagcgcttcctgctggcc
tacaaggaggaacgccggggtcctacactcattgctgtccactccaactgggagctgcga
agactggccagtgaggttcctgtcttggaggagttcccattagtgcctgtccgagtggct
gaaaagatcagctatggagtcctggactggcagcgccatggagcccgccgcatgatccgg
cactacctcaaccttgacacctgcctgtcacaggcctttgagatgagtaggtactttcac
attcctattggaaatctgccagaagacatttccacctttggctctgacctcttctttgca
cggcacctccagcgccacaaccacctgctctggctatcccctacttcccgtccagacctg
ggagggaaggaggcagatgacaaccgcctggtcatggaatttgatgaccgagccactgta
gagatcaacaattctggctgttactccactgtatgtgtggagctggacattcagaacctg
gcagtcaacaccatcctccagtctcaccacatcaatgatatggaaggggctggcagcatg
ggcatcagctttgacgtgatccagcaggcctctctggaagacatggtcacaggaaatcag
ccctccaatgctccagccagctacgatgagacagccctctgctccagtaccttcaggatc
ctgaagagcatggtggtgggctgggtgaaagagattacacagtaccacaacatctatgct
gacaaccaggtgatgcacttctaccgctggctccgatcaccatgctccctgctgcatgac
cctgccctacatcggacactacatggcatgatgaagaagctctttctacagcttgttgct
gagttcaagcgcctggggtcatcagtcatctatgccaattttaaccgcatcatcctctgt
acgaagaagcgccggattgaggatgccattgcctatgtggagtatattaccaacagcatc
cattctaaagagatcttccattccctggcaatttctttctcccgatgctgggaatttctt
ctctggatggatccatctaactatggtggaatcaaaggaaaagttcccagcagtattcac
tgtggacagcaaaactcccaggctggggaaggagctgaggataagcaggaggatgaggag
gaagaggaagaggaagaagagagtgtggaagaatctgaggtggaggagttactggaaaac
aactggaatattttgcagtttttgccacaggcagcctcctgccaaagttacttcctcatg
attgtttcagcatatatcgtggctgtgtaccacagcatgaaggatgagctgaggcgtagt
gccccaggtagcacccctgtgaagaggagggggcccagccagttctcccaggagaccgag
gcggcagcaggagcccttcctggaatgatcactttctctcaagattatgtggcaaatgag
ctcactcagagcttcttcaccatcactcagaagattcaaaagaaaatcacaggctctcgg
aactcaacagagccttcagagatgtttcctgtcctcccgggctcacacttgctgctcaac
aatcctgctctggagttcatcaaatacgtctgcaaggtactgtctctggacacaaacatc
acaaaccaggtgaacaagctgagcagagatttgcttcgcttggtggacgttggcgagttc
tctgaggaagcccaattcagagacccctgtcgctcctatgtgctccctgagatgatctgt
cacagctgtaatttctgtcgagacctggacctatgcaaagactcctccttctctcaggat
ggaactgtccttcctcagtggctctgtcccaactgccaggctgcctacgactcagctgcc
attgaggcagccctggtagaagctctgcagaggaagctgatggccttcactctgcaggac
cttatctgcctgaagtgccatggtgtgaaggaggcccacatgcctgtgtactgcagctgc
gcaggagactttgccctcaccatccacactcagatcttcatggaacaaattggaatcttt
cagaacattgcccggcattatggcatgttataccttcaggagaccctggagtggctactg
cagacaggtcctctctctaagtcttag
DBGET
integrated database retrieval system
