Perognathus longimembris pacificus (Pacific pocket mouse): 125349261
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Entry
125349261 CDS
T08928
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125349261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125349261
03041 Spliceosome [BR:
plop03041
]
125349261
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125349261
Spliceosome [BR:
plop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125349261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
NIPSNAP
Motif
Other DBs
NCBI-GeneID:
125349261
NCBI-ProteinID:
XP_048199211
LinkDB
All DBs
Position
3:complement(91225412..91275227)
Genome browser
AA seq
949 aa
AA seq
DB search
MAPRLCGISASARRLLGSPGSRGGDGAAAAAARFYSKDSEGSWFRSLFVHKVDPRKDAHS
TLLSKKETSNLYKIQFHNVKPECLDAYNSLTEAVLPQLHLDEDYPCSLVGNWNTWYGEQD
QAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRKERSRMLLSRRNQLLLEFSFWNEPQPRA
GGNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDL
QSREETRNAAWRKRGWDENVYYTGTAMSSESSKKRKPKVIRSDGAPTEGKRSRSDIEQEG
KYYSEEAEVDLRDPGRDYELYKYTCQELQRLMAEIQDLKSRGGKDVAIEIEERKIQSCVH
FMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKH
EEIDLVTLEEFYEEAPPDISKVEVTTGDPHQQTLARLDWELEQRKRLAEKYRECLSSKEK
ILKEIEVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQ
ATAYGQACDKTLSVAIEGSVDEAKALFKSSEDSQDDESDSDAEEEQTTKRRRPTLGVQLD
DKRKEMLKRHPLSVVLDLKCKDDSVLHLTFYYLMNLNIVTVKAKVTTATELIMPISAGDL
LSPDLVLSCLYPGDHGKKTPNPANQYQFDKVGILTLRDYVLDLGHPYLWVQKLGGLHFPK
EQPQHTVIADHWQSASHMETTMKLLKTRVQSRLALHKQFASLEHGIVPVTSDCQYLFPAK
VVSRLVKWMTMAYEDYLELHFTKNIVEAGLAGDTNLYYMALIERGTAKLQAAVVLNPGYS
SIPPIFQLCLNWKGEKTSSNDDNIRAMESEVNVCYKELCGPRPSYQLLTNQLQRLCVLLD
VYLETESHDDSVEGPKEFPQEKMCLRLFRGPSRMKPFKYNHPQGFFSHR
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggctccgcggttgtgcggcatctccgcgagcgcgcggcggctgctggggagcccaggg
tcccgcggcggggacggcgcggctgcagctgcggcgcgtttctactccaaggacagtgaa
ggcagctggttccgctccctctttgtccacaaggtggacccccggaaggatgcccactct
accctgctgtccaagaaggagaccagcaacctctataaaatccagtttcacaatgtgaag
cctgagtgtctggatgcctacaacagcctcacggaggctgtgctgccccagctgcacctg
gatgaggactacccctgctcgcttgtgggcaactggaacacgtggtacggcgagcaggac
caggcagtacacctctggcgattctcaggcggctacccagccctcatggactgcatgaac
aagctcaaaaacaacaaggaatacctggaattccggaaggagcggagccgtatgctgctg
tccaggaggaaccagttgctcctggagttcagcttctggaatgagccacagcccagagcc
ggtgggaacatctatgagctgaggacctacaagctcaagccaggaaccatgattgagtgg
gggaacaactgggcccgggccatcaaataccggcaggagaaccaggaggctgtgggcggc
ttcttctcacagataggggagctctacgttgtgcatcatctctgggcctataaggacctg
cagtctcgggaggagactcgaaacgctgcgtggaggaagcggggctgggatgagaatgtt
tactacacagggacagccatgtcatcagaatccagcaaaaaacggaaacccaaagtgatt
cgaagtgatggagctccaactgaaggaaagcgaagtcgatctgacattgagcaggaaggt
aaatactatagtgaggaggctgaggtggacctgcgggatcctggcagagactatgagctg
tacaagtacacgtgtcaggagcttcagaggctgatggccgagatccaggacctgaagagc
aggggcggcaaggatgtggcaattgaaattgaagaacggaaaattcagagctgtgtacat
ttcatgaccttaaagaagcttaaccgattggcccacatcagattgaagaaaggaagggat
cagacccacgaggctaagcagaaggtagacgcctaccacctgcagctacagaacctgctg
tatgaggtgatgcacctacagaaggagatcaccaaatgtttggagttcaagtctaagcat
gaagaaattgatctggtcactttagaggaattttatgaagaggctccaccagacatcagc
aaggttgaagtcaccacaggagaccctcaccagcagaccctggcacgtctggactgggag
ttggagcagcggaaaagactggcagagaaataccgagaatgcctgtccagcaaggagaag
atcctgaaggagatagaggtgaagaaggagtacctgagcagcctccagcctcgccttaat
agcatcatgcaggcttccctcccggtgcaggagtacctgttcatgccttttgaccaggct
cacaagcaatatgagaccgccaggcacctgccgccacccctctacgtgctctttgtccag
gccactgcatatggtcaggcctgtgacaagaccttgtctgtggcgatcgaaggcagtgtg
gatgaagccaaggctctgttcaagtcctctgaggactcccaagatgatgagagtgactcg
gatgctgaggaggaacagaccacgaaacggcggcgacccacactgggggttcagctggat
gacaagcgcaaggagatgctgaagagacacccactgtctgtcgtgctcgacctgaagtgc
aaagatgacagtgtgcttcacttgaccttctactatcttatgaacctcaacattgtgaca
gtgaaagccaaagtgacaaccgccacggagctgatcatgcccatcagtgcaggggatttg
ctgtctcctgacttggtgctgagctgtttgtatcctggggatcacggaaagaaaactcca
aatccagccaatcagtatcagtttgataaagtcggcatcctgactttaagagactatgta
cttgacctaggtcacccttatttgtgggtacagaagctcggtggcctccatttccctaaa
gagcagccccagcacacagtgattgctgaccactggcagagtgccagccacatggagacc
accatgaaactgctgaagaccagagtgcagtcccgcctggccctccacaagcagtttgca
tccctggaacacggcattgtgcctgttaccagtgattgccagtacctctttcctgccaag
gttgtctctcgcctagttaagtggatgacgatggcctatgaggattacctggagctgcat
tttacgaagaacattgtggaggcaggattggctggggacacaaatctctactacatggca
ctcattgagaggggcacagccaaactccaggccgctgtggtgctgaacccggggtactcc
tccatcccacccattttccagctctgtctgaactggaaaggggagaaaaccagcagcaat
gatgacaacatccgggctatggaaagcgaggtcaacgtgtgctacaaggagctgtgtggc
ccccggcccagctaccagctcctgaccaaccagctacagcggctgtgtgtgctgctggat
gtctacctggaaacagagagccatgatgacagtgtggagggacccaaggaatttccccag
gagaagatgtgtctgcggcttttcaggggtccaagcaggatgaagccgtttaaatataac
catcctcagggattcttcagccatcgctga
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