Perognathus longimembris pacificus (Pacific pocket mouse): 125349311
Help
Entry
125349311 CDS
T08928
Symbol
Depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
125349311 (Depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125349311 (Depdc5)
Membrane trafficking [BR:
plop04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
125349311 (Depdc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEPDC5_CTD
IML1
IML1_N
DEP
Motif
Other DBs
NCBI-GeneID:
125349311
NCBI-ProteinID:
XP_048199314
LinkDB
All DBs
Position
3:92959397..93089454
Genome browser
AA seq
1604 aa
AA seq
DB search
MRTTKVYKLVIHKKGFGGSDDELVVNPKVFPHIKLGDIVEIAHPNDEYSPLLLQVKSLKE
DLQKETISVDQTVTQVFRLRPYQDVYVNVVDPKDVTLDLVELTFKDQYIGRGDMWRLKKS
LVSTCAYITQKVEFAGIRAQAGELWVKNEKVMCGYISEDTRVVFRSTSAMVYIFIQMSCE
MWDFDIYGDLYFEKAVNGFLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSIDEFPEINRA
SIQQDHKGRFYEDFYKVVVQNERREEWTSLLVTIKKLFIQYPVLVRLEQAEGFPQGENST
SAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRMIDN
GIGVDLVCMGEQPLHAVPLFKLHNRSVPRDTRLGDDYNIPHWINHSFYTSKSQLFCNSFT
PRIKLAGKKPASEKAKNGRDTSLGTPKESDNALPIQVDYDAYDAQVFRLPGPSRAQRLAT
CRFSTRFAWGCMSVRERENHHWKSISSCDVSSSPSLQNRALPTEEVRSQASDDSSLGKSA
NILMIPHPHLHQYEVSSSLGYTSTRDVLENMMEPPQRDSSAPGRFHVGSAESMLHVRPGL
YTPQRALINPFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSGQRD
LTHSSAELLELAYHEAAGRHSTSRQPGDGMSFLNFSATEELSVSLLSNSGAGMNPRTQNK
DSLEDNVSTSPDPMPGFCCTVGVDWKSLTTPACLPLTTDYFPDRQGLQNDYTEGCYDLLP
EADMDRRDEEGVQMTAQQVFEEFICQRLMQGYQIIVQPKAQKPNPAVPPPLSSSPLYSRG
LVSRNRPEEEDQYWLSMGRTFHKVTLKDKMITVTRYLPKYPYESAQIHYTYSLCPSHSDS
EFVSCWVEFSHERLEEYKWNYLDQYICSAGSEDFSLIESLKFWRTRFLLLPACVTATKRI
TEGEVHCDIYGDRPRADEDEWQLLDGFIRFVEGLNRIRRRHRSDRMMRKGTTMKGLQMPG
PISTHSLESTAPSVVKKGTSALSALLEMEASQKCLGEQQAAAHGGKSSTQPAESSSIAMT
PTYMDSPRKDGAFFMEFVRSPRTASSAFYPQASLDQTVAPLLDGTTLGVSTSQSVDRGSS
QTYGSSQNLGDQSFPAANPSDSSSQQQTTSCLTSSSTLVEILEAMKHPSTGVQLLSEQKG
LSPCCFVSAEGVHWLMNNVEGVQTQAMAIDIMQKMLEEQLIAHASGEAWRTFIYGFYFYK
IVMDREPDRVAMQQPAATWHTAGVDDFASFQRKWFEVAFVAEELLHSEIPAFLLPWLPSR
PASYASRHSSFSRSFGGRSQAAALLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFS
LNAAFEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYGDPLRAQL
FIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAIAHRFGFVQDKYSASAFNFPAENK
PQYIHVTGTVFLQLPYSKRKFSGQQRRRRNSTSSTNQNMFCEERVGYNWAYNTMLTKTWR
SSATGDEKFADRLLKDFTDFCINRDNRLVLFWTSCLEKMHASAP
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccacaaaggtctacaaacttgtcatccacaagaagggcttcgggggcagtgat
gatgagctagtggtgaatcccaaagtattccctcacattaagcttggagacattgtggag
attgctcaccccaatgatgagtacagccctctgcttttgcaagtcaagtcacttaaggaa
gatttacagaaagaaactatcagtgtggaccagactgtgactcaagtattccggcttaga
ccttatcaagatgtctatgtgaatgttgtagaccccaaggatgtgacccttgacctagtg
gaattaacttttaaggatcaatatattggccgaggggatatgtggcgactaaagaagagt
ttggtgagcacatgtgcttatatcacccagaaggtagaatttgctggtatcagggcacag
gctggtgagctgtgggtaaagaatgagaaagtcatgtgtggttatatcagtgaagatacc
agggtggtcttccgttctacgtcagctatggtttacatatttattcagatgagctgtgaa
atgtgggattttgatatttatggagatctgtattttgagaaagctgtgaatggtttcctt
gctgatttgtttacgaagtggaaggagaagaactgtagtcacgaagtaacagtggtcctg
ttttctcgaactttctatgatgcaaaatcaattgatgaatttcctgaaataaaccgagcc
tcaattcaacaggatcataaagggcgattctatgaagacttctacaaagtggtggtacag
aatgagagaagggaagaatggacttcactcctcgtgaccattaaaaagctcttcatccag
tatccagtgttggtgcgactggaacaggcagagggctttcctcaaggagaaaattctacc
tcagcccaaggaaactacctggaggccatcaacctttcctttaatgtgtttgacaagcat
tacatcaaccgtaacttcgaccgaactgggcagatgtctgtggtgatcacaccaggagtg
ggtgtttttgaagtggaccgcttactcatgatcttgaccaagcagcggatgatagataat
ggaattggtgtagacttggtttgtatgggagaacaaccattacatgctgtcccattgttc
aagctacacaatcggagtgttcctcgggatactcgccttggcgatgactataatattcct
cactggataaaccacagtttctacacatcaaaaagccagctcttttgtaacagcttcact
ccacgaataaaactggcaggaaagaagcctgcctctgagaaagcaaaaaatggccgtgat
acatctctcgggactccaaaagaatctgataacgcccttcccatccaagtagattatgat
gcctatgatgcccaagtattcaggttgcctggcccatccagggctcagcgcctcgccacc
tgcaggttttctaccagattcgcttggggatgcatgtcagtgcgggagcgagagaatcat
cactggaaaagcatcagctcctgtgacgtttcatctagcccttccctgcagaaccgtgca
ctgcccacagaggaagtaaggagtcaggcttctgatgacagctccctgggcaagagtgcc
aacatcttgatgattccacatcctcacctgcaccagtatgaagtcagcagctccttgggc
tacaccagcacccgagatgtcctagagaacatgatggagccaccacagcgggactccagc
gcaccagggaggttccacgtgggcagtgcagagtccatgcttcatgttcgacctggtctc
tacacaccccagcgagcactgattaatccctttgccccctcacgaatgcccatgaaactc
acatctaacagaaggcgctggatgcatacgtttcctgtgggaccatccggagaggctatc
cagatccatcatcagacccggcagaatatggcggagctgcagggcagcgggcagagggac
ctaactcactcttctgcagagctgttggagttagcctatcatgaagctgctggaaggcac
agcacttcccgccagcctggtgacggcatgtccttcttgaacttcagtgcaacggaagag
ctttctgtcagcctgcttagcaacagtggtgcaggtatgaatcctaggacccagaacaag
gactctctagaggacaatgtttctacttctcctgacccaatgccaggcttctgttgcaca
gttggagtggactggaagtctctcactactccggcgtgcctccccctcaccaccgactac
ttccctgaccgccagggcctgcagaatgactacacggagggctgctatgatctcctccca
gaagcagacatggacaggagggatgaggagggtgtgcagatgacagcccagcaggtgttt
gaagagttcatttgccagcggctcatgcagggctaccaaattatagtgcaacccaaggcc
cagaaacccaacccagctgtcccacctcccctgagcagtagcccactctatagccgaggc
cttgtgtcccgaaaccgccccgaagaagaagatcagtattggctgagtatgggtagaact
ttccacaaagtgaccctgaaagacaagatgatcacagtgactcggtaccttcccaagtac
ccttatgaatctgcccagatccactacacatacagcctgtgcccttcccactcagactca
gagttcgtctcctgttgggtggaattctcccatgagcgactagaggagtacaagtggaac
tacttagatcagtatatttgttctgctggttctgaagatttcagtttaattgaatctctg
aagttctggagaacccgcttcttgctcctgccagcctgtgtcactgccaccaagcgcatc
acagagggggaggtccactgcgacatctatggcgacaggccgcgtgcagatgaggatgag
tggcagctcctggacggctttatccgctttgtggagggcttgaaccggatccgcaggcgt
catcgctcagaccgcatgatgcggaaagggaccaccatgaaaggcttgcagatgcctggg
cccatttctacgcactctctcgagtcaacagccccttcagttgtgaagaagggaacctca
gctctgtctgccctgctggagatggaggccagtcagaagtgcctaggagaacagcaggca
gctgctcatggggggaagagctccacccagccagcagagagcagcagcattgccatgact
cccacttacatggacagcccacgaaaggatggggccttctttatggagtttgtccgcagc
ccacgcacagcatcgtctgccttctaccctcaggcatctctggaccaaacagttgctcca
ttgttggatggcaccactttgggggtaagcacaagccaatctgtggacagaggaagcagc
cagacctatgggagttcccagaacttaggagatcaatccttccccgctgcaaaccccagt
gatagcagctctcagcagcagacgacaagctgtttgacatcatcttccactctagtggag
atcctggaagccatgaagcacccctcgacaggagtccagctgctctctgaacagaaaggc
ctctcaccatgctgcttcgtcagtgccgagggggtgcattggctgatgaacaacgtagag
ggggtgcagacacaggcaatggccattgacatcatgcagaaaatgctggaagagcagctc
attgcgcatgcttctggtgaagcctggcggaccttcatctacggcttctatttctacaag
atagtgatggacagagagccggaccgagtggccatgcagcagcccgctgccacctggcac
acggcaggggtggatgacttcgccagcttccagcgcaagtggtttgaggtggcctttgtg
gcagaagagctcttacactcggagattcccgcctttctcctgccgtggctccccagccgg
ccagcctcctatgcaagcagacacagctccttcagccgcagttttggaggacgcagtcag
gcagctgcacttttagccgccaccgtccctgagcagaggactgtgaccctggatgttgac
gtgaacaaccgcacggaccggctggagtggtgcagctgttattaccatggcaacttctct
ctgaatgcagcctttgagatcaagctgcactggatggccgtgactgctgccgtgctcttt
gagatggtccaaggttggcatcggaaagctacctcctgtggctttttgttggtccccgtt
ttagaaggtcctttcgcgctgcccagttatctgtatggtgacccccttcgggcccagctc
ttcatcccactcaacatcagctgtttgctcaaggaaggcagcgagcatctgtttgacagc
tttgaaccagaaacatattgggaccgcatgcacctcttccaggaagccattgcccacagg
tttgggtttgtccaagataaatattctgcctctgcttttaacttccctgctgaaaacaag
cctcagtacatccacgtgacaggcacagtgttcctgcagctgccctactccaagcgcaaa
ttctccgggcagcagcgccgccggcggaactccaccagctccaccaaccagaacatgttt
tgtgaggagagggtgggctacaactgggcctacaacaccatgctgaccaagacatggcgc
tccagtgccacaggggatgagaagtttgccgatcggctgttgaaagacttcacagacttc
tgcatcaaccgggacaaccggctggtcctgttctggacaagttgtctggagaagatgcac
gccagcgccccatga
DBGET
integrated database retrieval system
