Perognathus longimembris pacificus (Pacific pocket mouse): 125349556
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Entry
125349556 CDS
T08928
Symbol
Ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10 isoform X1
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125349556 (Ddx10)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125349556 (Ddx10)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
90S particles
Helicases
125349556 (Ddx10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
PAS_11
Motif
Other DBs
NCBI-GeneID:
125349556
NCBI-ProteinID:
XP_048199749
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All DBs
Position
3:111249733..111364861
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AA seq
887 aa
AA seq
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MGKTPNSLGPGARPDPVRSFNRWKKKHSHRQNQKKQLRKQLKKPEWQVEREGISRLMQNY
EKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKT
LAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAALIIGGKD
LKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAII
ENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELHQK
ISVLYSFLKSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNE
FVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGEALLILL
PSEEQGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDKDLKERAQRCFVSYIRSV
YLMKDKNVFDVSKLPIPEYALSLGLAVAPRVRFLQKMQNKLTKESVRSQGNDDTEPRAPS
LTNDEVEEFRAYFSEKMSILQKGGKSLGGSEYRVASDSGDEEEEEEDEEEEEEEEEDDDK
MKETLGKTRGSQTESVPSADKVKKVKEVPVQLLSGGDEEEEDGPDADFLTVKRRDVFGLD
LKENKALPKKEPSKSNVKKKLTKVAEAKKVMKRNFKVNKKITFTDDGELVQQWPQVQKST
TKDTEEEDDSGGINLEKAKERLQEEDKFDKEEYRKRIKAKHREKRLKEKDARREANKRQA
KAKDEEEEAFLDWSDDDDDVGFDPSTLPDPDKHRSSEDSDSEYMEDNISDTKKQQGMKKR
SNNEAEDTGPTSHHRKKAKWESSEPLDTGLSLAEDEELVLHLLKNQS
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaactcccaactccctgggccctggagcccgacccgacccggtaaggagcttc
aaccgctggaagaaaaaacacagccataggcagaaccaaaagaagcagttgaggaagcag
ctgaagaagcccgaatggcaggtcgagcgcgagggcatcagccgtctgatgcagaactac
gagaagataaatgtaaatgaaattacaagattttcagatttcccgttgtctaaaaagaca
ttgaaaggtttgcaagaagctcagtaccgcttggtaacagagatacagaagcagacaatt
gggttggctttgcaaggcaaagatgtgcttggagctgctaaaactgggtctggcaagact
ttggctttccttgttccagtgctggaagccctataccgactgcagtggacctcaacagat
gggctgggtgttctgataatatcaccaaccagagagctggcctaccagacttttgaggtt
ctccgaaaagtagggaagaatcatgacttttcagctgctctcatcattggtggaaaggat
ctgaaacatgaagctgagaggatcaacaatataaatatacttgtttgcacaccaggtcgg
cttcttcaacacatggatgaaacaatatgttttcatgccaccaatcttcaaatgttagtt
cttgatgaagcagatagaatcttggatatgggctttgctgatactatgaatgctattatt
gaaaatcttcctaagaaacgtcagactttacttttctcagccacacaaaccaaatctgta
aaagaccttgcacgcttgagtttgaaaaaccctgagtatgtgtgggttcatgaaaaagca
aaatacagcacaccagctactttggagcagaactacatagtttgtgagctgcatcaaaag
ataagtgtgctctattcctttttgaaaagccacctgaagaagaagagtattgtatttttc
tccagttgcaaagaggtgcagtacctgtaccgagtgttctgccggctccgtcctggaatt
tctatccttgctctccacggccgacagcagcagatgagaagaatggaagtctacaatgag
tttgtccgaaagagagctgctgtactctttgctactgatattgcagccagaggactggat
ttcccggctgttaattgggttcttcagtttgactgtccagaggatgccaacacatacatt
cacagagcgggtagaactgccaggtacaaagagggtggtgaggcactattaattctgctt
ccttcagaagagcaagggatggtgcagcagcttctccagaagaaagtacctgtgaaggaa
atcaaaataaatccagaaaagcttatagatgtccagaaaaaattggaatcctttttagct
caagataaagatttgaaagaaagagctcaaaggtgttttgtctcctatatacgttcagta
tatcttatgaaggataaaaatgtatttgatgtaagcaagttacctattcctgaatatgca
ttgtctcttggtcttgccgtggcacctcgggtaagatttcttcagaaaatgcagaacaag
ctcaccaaagaatcagtaaggagccaaggcaatgacgacactgaacccagagctccctcc
cttaccaatgatgaagtggaagaatttagagcctatttcagtgagaaaatgtctatactt
cagaaaggtgggaaaagtctaggaggatcagagtacagagtggctagtgatagtggtgat
gaagaagaggaggaggaggacgaagaggaagaggaagaggaagaagaggatgatgacaaa
atgaaagagacattaggaaaaacaaggggatctcagactgaatctgttcccagtgctgac
aaggtaaagaaggtcaaggaagttcctgtgcagctcctgagtggcggagatgaagaggaa
gaagatggacctgatgctgatttccttacagtgaagcggcgtgatgtgtttgggttggat
cttaaagagaataaagcattaccgaagaaagaaccttctaaatccaatgtgaagaaaaaa
ttaaccaaagttgctgaagcaaaaaaagtaatgaagagaaattttaaagtgaataagaag
ataacctttactgatgatggggagttggttcagcagtggccacaagtacagaaatctacc
acaaaggatacagaggaggaagatgactctggtggtatcaacttagaaaaagcaaaggaa
aggcttcaggaggaagacaaatttgacaaagaagaatacaggaagaggattaaggcaaag
catcgggagaaaagactgaaagaaaaagatgccagaagagaagccaacaagagacaagca
aaggccaaagatgaagaagaagaagcctttctggattggagtgatgatgatgatgatgtt
ggatttgatccaagcacccttccagatccagataagcacagaagttccgaagactcagat
agtgaatatatggaagacaatataagtgataccaagaaacagcaaggaatgaagaaaagg
agcaataatgaagcagaagacacgggaccaacaagtcatcatagaaagaaggccaagtgg
gaatcctcagagcctttggatacaggcctttccttagcagaagatgaagaactggtgttg
catctgcttaaaaatcaaagttaa
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