Perognathus longimembris pacificus (Pacific pocket mouse): 125349630
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Entry
125349630 CDS
T08928
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125349630 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125349630 (Ddx6)
03036 Chromosome and associated proteins [BR:
plop03036
]
125349630 (Ddx6)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125349630 (Ddx6)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125349630 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
125349630 (Ddx6)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125349630 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
125349630
NCBI-ProteinID:
XP_048199902
LinkDB
All DBs
Position
3:complement(117399228..117435209)
Genome browser
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTPTQQQMNPLKNTNTINNGTQQQAQ
SMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctgtccagtcaaaatggtcag
ctgagaggccctgtgaaacccagtggtggccctggaggagggggtacacccacacagcaa
cagatgaacccgttgaaaaataccaacacaatcaataatggcactcaacagcaagcacag
agcatgaccaccactattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacatccacaaaaggaaatgagtttgaagat
tactgtttaaaacgggagttactgatggggatttttgaaatgggctgggaaaagccatct
ccaattcaggaggagagcattcccattgctttatctggtagggatatcctagctagagca
aaaaatggaacaggcaagagcggtgcctacctcattcccttacttgaacggctagacctg
aagaaggacaatatacaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggctaaagtgatggcaaccaca
ggaggaaccaatttacgagatgatataatgaggcttgatgatacagtgcatgtggtgatt
gctacccctggcagaattctggatcttatcaagaagggagtagcgaaggtcgatcatgtc
cagatgatagtattggatgaggcagataaattgctgtcacaagattttgtgcagataatg
gaggatattattctcacgctacctaaaaacaggcagattttactctattccgctactttc
cctcttagtgtacaaaagtttatgaattcccatttgcagaaaccctatgagattaacctg
atggaggaactgactctgaagggagtaacccagtactatgcttatgtaactgagcgccag
aaagtacactgcctcaacacacttttctccaggcttcagataaaccagtcaatcattttc
tgcaactcctctcagcgagttgaattgttagccaagaagatttctcagctgggttattct
tgcttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtatttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtaataaacttcgacttcccaaagttggcagagacctatcttcat
cgtattggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatat
gatgatcgcttcaacctgaaaagtattgaggagcagctgggaaccgaaattaaacccatc
ccaagcaacatcgacaagagcctgtatgtggcagaataccacagcgagcctgtagaagat
gagaaaccttaa
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