Perognathus longimembris pacificus (Pacific pocket mouse): 125350168
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Entry
125350168 CDS
T08928
Symbol
Atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04136
Autophagy - other
plop04140
Autophagy - animal
plop04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125350168 (Atg16l1)
04136 Autophagy - other
125350168 (Atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125350168 (Atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125350168 (Atg16l1)
03029 Mitochondrial biogenesis [BR:
plop03029
]
125350168 (Atg16l1)
Membrane trafficking [BR:
plop04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
125350168 (Atg16l1)
Others
Rab GTPases of specific organelles
Auto phagosome
125350168 (Atg16l1)
Mitochondrial biogenesis [BR:
plop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125350168 (Atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
KASH_CCD
APEH_N
DUF1411
Fez1
DUF2332
Motif
Other DBs
NCBI-GeneID:
125350168
NCBI-ProteinID:
XP_048200438
LinkDB
All DBs
Position
4:complement(4997102..5028024)
Genome browser
AA seq
621 aa
AA seq
DB search
MSSGLRAADFPLWKRHIAAELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEK
HDTPNRHDISSDKNELCFVWWWFSPGHDGTWNDSHLQEMSKLRIKHQEELTELHKKRGEL
AQLVIDLNNQMQQKDREMQMNEAKIAECLQTISDLETECLDLRSKLQDLEIANQTLKDEY
DALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAE
AAKEPLPVEQDDDIEVIVDETSDHPEETSPVRAVSRTATKRLSQPAGGLLDSITNIFGRR
SVSSFPVPQDNVDTHPASGKDVRVPTTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRV
KLWEACGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTG
HSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGH
FDKKIRFWDIRSESVVREMELLGRITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTF
SAPGFKCGSDWTRVVFSPDGGYVAAGSAEGSLYVWNVLTGKVEKVLSKQHSSSINAVAWA
PSGLHVISVDKGSKAVLWAHP
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggggctccgagctgccgactttcccctctggaagcgtcacatcgcggcggag
ctgcggcgccgggaccggctgcagaggcaggcgttcgaggagatcattctgcagtataac
aagttactggaaaagtcagatcttcattcagtgttggcccagaagctacaggccgaaaag
catgacacaccaaacaggcatgacataagtagtgataagaacgagttgtgttttgtctgg
tggtggtttagccccggacacgatggcacatggaacgacagtcatctacaagagatgtca
aagctgcggattaagcaccaggaagagctgactgagttacacaagaaacgtggggagtta
gctcagttggtgatcgacttgaataaccaaatgcagcagaaggacagggagatgcagatg
aatgaagcaaaaattgctgagtgtttgcagactatctctgatctggagaccgaatgcctg
gatctgcgcagcaagctgcaggaccttgagatagccaaccagaccctgaaggacgaatat
gacgctctgcagatcacttttactgccttggaggagaaactgaggaaaactacagaggag
aaccaggagctggttactaggtggatggctgagaaggcccaagaagccaatcgcctcaat
gccgagaacgagaaagactccaggaggcgtcaagcccgactgcagaaagaacttgcagaa
gcagcaaaggagcctctgccagttgaacaggatgatgacattgaagtcatagtggatgaa
acctcagaccacccagaggagacttctcctgtgagagctgtcagcagaacagccactaag
cgactctcgcagcctgctggaggccttctggattctatcactaatatctttgggagacgt
tctgtctcttccttcccagtcccccaggacaatgtggatactcaccctgcttctggtaaa
gacgtgagggtaccaaccactgctgtgtgtgtctttgatgcacacgatggagaagttaat
gctgtgcagttcagtccgggttcccgattactggccacaggaggcatggatcggagggtt
aagctctgggaagcatgtggagataaatgtgaattcaaaggttcactgtctggcagtaat
gccggaatcacaagcattgaatttgatagtgctggagcttatctcttagccgcatcaaat
gattttgcaagccgaatctggactgtggatgattataggttacggcacacactcactgga
cacagtgggaaagtgctttctgctaagttcctgctggacaacgcacggattgtctcggga
agtcatgatcggaccctcaaactctgggatctacgcagcaaagtctgcataaagacagtg
tttgcgggatccagttgcaacgatattgtctgcacagaacaatgtgtaatgagtggacat
tttgataagaaaatccgtttctgggacatccgatcagagagtgtggtccgagagatggag
ctgttggggaggatcactgccttggacttaaacccagagaggacagagctcctgagctgc
tcccgggatgacctgctgaaagtcattgatctccggacaaatgctgtgaagcagacattc
agtgcgcctggattcaagtgcggctcagactggacacgagtggtcttcagccctgatggt
ggttatgtggcagcaggctcagccgaaggctcgctttatgtctggaacgtgctcacaggg
aaagtggagaaggtgctttccaaacaacacagctcctccatcaatgcggtggcctgggcc
ccctccggcttgcatgtcatcagcgtggacaaaggcagcaaagcggtgctgtgggctcac
ccctga
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